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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g02560.2 | ||||||||
Common Name | GRF5, LOC4339928, Os06g0116200, OSJNBa0019F11.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRF | ||||||||
Protein Properties | Length: 354aa MW: 38226.4 Da PI: 8.5629 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.5e-24 | 97 | 141 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ LOC_Os06g02560.2 97 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 141 79****************************************986 PP | |||||||
2 | QLQ | 58.1 | 2.6e-20 | 24 | 58 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKyL+a++PvP +Ll++i+ LOC_Os06g02560.2 24 VFTAAQWAELEQQALIYKYLVAGVPVPGDLLLPIR 58 5********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.6E-10 | 23 | 59 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.187 | 24 | 59 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-14 | 25 | 58 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.346 | 97 | 141 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.1E-21 | 98 | 140 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MLSSSPSAAA PGIGGYQPQR GAAVFTAAQW AELEQQALIY KYLVAGVPVP GDLLLPIRPH 60 SSAAATYSFA NPAAAPFYHH HHHPSLSYYA YYGKKLDPEP WRCRRTDGKK WRCSKEAHPD 120 SKYCERHMHR GRNRSRKPVE SKTAAPAPQS QPQLSNVTTA THDTDAPLPS LTVGAKTHGL 180 SLGGAGSSQF HVDAPSYGSK YSLGAKADVG ELSFFSGASG NTRGFTIDSP TDSSWHSLPS 240 SVPPYPMSKP RDSGLLPGAY SYSHLEPSQE LGQVTIASLS QEQERRSFGG GAGGMLGNVK 300 HENQPLRPFF DEWPGRRDSW SEMDEERSNQ TSFSTTQLSI SIPMPRCGSP IGD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32618 | 0.0 | callus| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988717 | 0.0 | ||||
Expression Atlas | Q6AWY4 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g02560.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g02560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103508 | 0.0 | AK103508.1 Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641603.1 | 0.0 | growth-regulating factor 5 isoform X2 | ||||
Swissprot | Q6AWY4 | 0.0 | GRF5_ORYSJ; Growth-regulating factor 5 | ||||
TrEMBL | A0A0E0A484 | 0.0 | A0A0E0A484_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PSP9 | 0.0 | A0A0E0PSP9_ORYRU; Uncharacterized protein | ||||
STRING | ORGLA06G0010200.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-26 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g02560.2 |
Entrez Gene | 4339928 |
Publications ? help Back to Top | |||
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