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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g48990.1 | ||||||||
Common Name | Os05g0564500, OsJ_018772, OSJNBb0053D02.14, WOX12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WOX | ||||||||
Protein Properties | Length: 516aa MW: 54610.1 Da PI: 6.9203 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.4 | 3.7e-16 | 70 | 129 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 ++R+++ +eq+++Le F++ +p ++e++++ +l ++ +++V++WFqNr+ + k LOC_Os05g48990.1 70 KPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygQVGDANVFYWFQNRKSRTK 129 89*****************99*************************************99 PP | |||||||
2 | Wus_type_Homeobox | 107.7 | 6.8e-35 | 69 | 131 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG+++d+NVfyWFQNrk+R ++k LOC_Os05g48990.1 69 PKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTKNK 131 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-11 | 64 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.074 | 66 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-6 | 68 | 135 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-6 | 69 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.05E-6 | 69 | 131 | No hit | No description |
Pfam | PF00046 | 8.4E-14 | 70 | 129 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MASPNRHWPS MFRSNLACNI QQQQQPDMNG NGSSSSSFLL SPPTAATTGN GKPSLLSSGC 60 EEGTRNPEPK PRWNPRPEQI RILEGIFNSG MVNPPRDEIR RIRLQLQEYG QVGDANVFYW 120 FQNRKSRTKN KLRAAGHHHH HGRAAALPRA SAPPSTNIVL PSAAAAAPLT PPRRHLLAAT 180 SSSSSSSDRS SGSSKSVKPA AAALLTSAAI DLFSPAPAPT TQLPACQLYY HSHPTPLARD 240 DQLITSPESS SLLLQWPASQ YMPATELGGV LGSSSHTQTP AAITTHPSTI SPSVLLGLCN 300 EALGQHQQET MDDMMITCSN PSKVFDHHSM DDMSCTDAVS AVNRDDEKAR LGLLHYGIGV 360 TAAANPAPHH HHHHHHLASP VHDAVSAADA STAAMILPFT TTAAATPSNV VATSSALADQ 420 LQGLLDAGLL QGGAAPPPPS ATVVAVSRDD ETMCTKTTSY SFPATMHLNV KMFGEAAVLV 480 RYSGEPVLVD DSGVTVEPLQ QGATYYVLVS EEAVH* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A3B6V0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g48990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g48990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124143 | 0.0 | AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881188.1 | 0.0 | WUSCHEL-related homeobox 12 | ||||
Swissprot | A3B6V0 | 0.0 | WOX12_ORYSJ; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A0E0PRA2 | 0.0 | A0A0E0PRA2_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AWR6 | 0.0 | B8AWR6_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9FLM6 | 0.0 | B9FLM6_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI05G27780.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 | Representative plant | OGRP6103 | 12 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-46 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g48990.1 |
Publications ? help Back to Top | |||
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