PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g48690.1
Common NameLOC4339599, OJ1115_B06.8, Os05g0560600, OsJ_19530, OSNPB_050560600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 347aa    MW: 37444.3 Da    PI: 10.5017
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g48690.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-1340126186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         st+++f +l+
  LOC_Os05g48690.1  40 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARVMP------STWSFFPELD 126
                       7******************************************99999999********************999886......5899999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2638128No hitNo description
Gene3DG3DSA:1.10.10.602.8E-438110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEVREMAVAA AAAAAASSGG GGGGLRMPPP NPNLPYREDC WSEGETEALV RAWGSRYVEL  60
NRGNLRQKQW QEVADAVNSR RGAAARRRPP RTDVQCKNRV DTLKKKYKAE RARVMPSTWS  120
FFPELDRLVG PTLSASASKR PSPSPSPVPP PPYFAMPIHP SAVRKPPSPS PSPSPPPPMA  180
LPLPSYRRGS PLPAAALIQQ EAAAAAAAAV SDSEDSEGPG DNNNHNAQRS PSQSVSSRSG  240
NSNKRSRQEV DGGFRELARA IEAFAEMYER VESAKQKQAL EIERQRIDFL KQLEVKRMEN  300
FVDAHVKLAR AKRIKKHAGT APDGIGAAEL VSSVAALPFL STSTYI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.353560.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379917370.0
Expression AtlasQ688Y5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g48690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g48690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133330.0AC113333.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1115_B06, complete sequence.
GenBankAK0678620.0AK067862.1 Oryza sativa Japonica Group cDNA clone:J013124K11, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639809.10.0trihelix transcription factor ASIL2
TrEMBLA0A0E0PR600.0A0A0E0PR60_ORYRU; Uncharacterized protein
TrEMBLQ688Y50.0Q688Y5_ORYSJ; Os05g0560600 protein
STRINGORUFI05G27490.10.0(Oryza rufipogon)
STRINGOS05T0560600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-30sequence-specific DNA binding transcription factors