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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g41240.1 | ||||||||
Common Name | OsJ_19028 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 258aa MW: 28529.1 Da PI: 6.9705 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1.1e-32 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl LOC_Os05g41240.1 45 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.742 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-31 | 43 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-16 | 44 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-25 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.3E-24 | 131 | 177 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMYHAKKFSV PFGPQSTQSN EHMSNIGAFG GSNMGSPANP AGSGKQRLRW TSDLHNRFVD 60 AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYIPESPAEG SKDEKKDSSD 120 SLSNTDSAPG MQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQM IIEEQQKLGG 180 SLKACEEQKL PHSPPSLDDY PDSMQPSPKK PKMDNLSPDS VRDVTQSDFE SHLIGPWDQE 240 AAFRVDEFKA DPGLNKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13978 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979330 | 0.0 | ||||
Expression Atlas | B9FKW8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g41240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g41240 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061987 | 0.0 | AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence. | |||
GenBank | AK069306 | 0.0 | AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639152.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639153.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639154.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639155.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 5e-75 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0E0A115 | 0.0 | A0A0E0A115_9ORYZ; Uncharacterized protein | ||||
TrEMBL | B9FKW8 | 0.0 | B9FKW8_ORYSJ; Uncharacterized protein | ||||
TrEMBL | Q6F335 | 0.0 | Q6F335_ORYSJ; Os05g0491500 protein | ||||
STRING | OGLUM05G22410.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OS05T0491500-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 9e-56 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g41240.1 |