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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g39590.3 | ||||||||
Common Name | DREB2D, ERF43, LOC4339084, Os05g0473300, OsJ_18893, P0486C01.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 27689.2 Da PI: 4.8025 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 67 | 115 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p + r kr++lg+fg+a +Aa a+++a+ ++ g LOC_Os05g39590.3 67 YRGVRQRR-WGKWVSEIREP---N-RgKRHWLGTFGSAVDAALAYDKAAASILG 115 9****998.**********8...3.35**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.7E-29 | 66 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.101 | 66 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-34 | 66 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 67 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 67 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.95E-18 | 67 | 122 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-20 | 67 | 123 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-11 | 105 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MAAGEGDVGM EVETKAPAMP PPPPASSSAA RKKKQARAKN GDTPEPDAAG GARARASRRA 60 KRGPGSYRGV RQRRWGKWVS EIREPNRGKR HWLGTFGSAV DAALAYDKAA ASILGPRAVL 120 NFPAFSPPAA AIAAPEQCEP PFCSPATTAA ATAPEQRQTP GCSPAAVAGS GGGAVFEERD 180 VKPVVLPLPL PAILQDGGGT EAMAQHWDWE WDASWPELEM FECLDDIAMY LDVDAVMTTR 240 DCKVEELDAD IVDSPLWTLS D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 66 | 123 | 5 | 63 | ATERF1 |
3gcc_A | 2e-16 | 66 | 123 | 5 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54212 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32995064 | 0.0 | ||||
Expression Atlas | Q65WX1 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g39590.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g39590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102559 | 0.0 | AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638470.1 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
Refseq | XP_015638471.1 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q65WX1 | 0.0 | DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A2Y5N6 | 0.0 | A2Y5N6_ORYSI; Uncharacterized protein | ||||
STRING | OS05T0473300-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 5e-15 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g39590.3 |
Entrez Gene | 4339084 |
Publications ? help Back to Top | |||
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