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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g39480.1 | ||||||||
Common Name | OSJNBa0052E20.13, P0015C02.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 910aa MW: 103784 Da PI: 8.3443 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.3 | 1.9e-16 | 151 | 230 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn YA+ +GF +r+sk++++ + g +++f+C +eg++++ + + tr+g ka++++++++ ++kw+v+ +++eHnHe+ LOC_Os05g39480.1 151 FYNLYARFTGFGIRRSKNRYK-DGGVKSMQEFCCIREGRDNSVT---------GPPTRIGYKAMVRLNRSSeSQKWRVSAFVSEHNHEMK 230 9***************99987.889999**********988754.........569**************99***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.3E-11 | 151 | 229 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-30 | 353 | 446 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.237 | 636 | 672 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.8E-5 | 637 | 668 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.4E-5 | 647 | 674 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 910 aa Download sequence Send to blast |
MSSARSVASP SAVRVGGVSS APDVEQQKSV AAVGASSPVS SSKHHHMAKA EDGTITVNGD 60 KQHNPAADRG SYQNPCWTET IFAKIAMEEE GWPEKGGEDH SGQPMDVVPL ERIVVEGEED 120 SDLLPISLFD PAILLPKIGQ TFNEDSHGYA FYNLYARFTG FGIRRSKNRY KDGGVKSMQE 180 FCCIREGRDN SVTGPPTRIG YKAMVRLNRS SESQKWRVSA FVSEHNHEMK RDLQHTKHFR 240 SHNFIDEGTK RNIKEMVDNG MTPTTMYGLL SGMHGGPSLT PFTRRAVTRM AYAIRRDECS 300 NDVQKTLNFF REMQCRSKNF FYTIQIDGAS RIKNIFWCHS LSRLSFDHFG DAITFDTTYQ 360 TNRYNMPFGI FVGVNNHFQT AIFGCALLRE ETIEAFKWLF QTFTDAMHGK RPAAILTDNC 420 HQMEVAIKAV WPETIHRVCK WHVLKNAKEN LGNIYSKRSS FKQEFHRVLN EPQTEAEFEK 480 AWSDLMEQYN LESSVYLRRM WDMKKKWAPA YFREFFFARM STTQRSESMN HVLKKYVKPS 540 SSLHGFAKRY ENFYNDRIEA EDAEEHDTYN EKVSTLTSSP IEKHASRVYT RGEFSRFKEQ 600 FKLSFSFMVY HTSDQHVLQL VHIGDDTLQS WGSKEFKVQV DLTEQDLSCG CKLFEHLGII 660 CSHIIRVMVQ YGFTEIPKKY ILKRWTKDAR DSIPKHLEES YLKDKEAASS RTYRNTLLHK 720 SALDMVRLGG TSSETYEKTV EVLTKLIGEL QVMCTSQVVN NKEIHCGDRT IGKKPTGVQL 780 DDSVDSSDSE HGMSDEFCVA DEDGIGQDVS AGEDSVDVDM TDVNEEDILP PEVRRSRGRP 840 RSTRLMSKGE TSSKAKKKKA SESTSKDESK NHAKGKKEST KQIRYCKQCG GHGHYKSTCG 900 RKSSYERRK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12304 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ATW8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g39480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g39480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC121364 | 0.0 | AC121364.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0052E20, complete sequence. | |||
GenBank | AC135423 | 0.0 | AC135423.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0015C02, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q6ATW8 | 0.0 | Q6ATW8_ORYSJ; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-115 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g39480.1 |