PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g38600.1
Common NameLOC107278211, Os05g0460900, OSNPB_050460900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 175aa    MW: 18043.1 Da    PI: 8.0384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g38600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000843352120
                      EEETTTTEEESSHHHHHHHH CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                      ++C+ C+k+F++   L  H 
  LOC_Os05g38600.1 33 FRCKTCSKTFTSFQALGGHR 52
                      89*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-63255No hitNo description
PfamPF139122.1E-93255IPR007087Zinc finger, C2H2
SMARTSM003550.413355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1183360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-685112No hitNo description
PROSITE profilePS5015710.53390117IPR007087Zinc finger, C2H2
SMARTSM00355590112IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-1090114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASGQRAVGE GSGGLRPTTH VAGGGGSARG EYFRCKTCSK TFTSFQALGG HRTGHTRMAA  60
RQRQEHGAAG AAVVGATNNQ RRVVSAHQWH LCAVCGVEFR MGQALGGHMR RHRGEAAAAT  120
PPPAAAAASA GAVSSMEPPE MIDLNSPPAV EEAGEGDQEV ERAEQEPHLL NLLV*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0N7KKX2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g38600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g38600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1172650.0AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638878.11e-122zinc finger protein ZAT7
TrEMBLA0A0E0PNK31e-121A0A0E0PNK3_ORYRU; Uncharacterized protein
TrEMBLA0A0N7KKX21e-121A0A0N7KKX2_ORYSJ; Os05g0460900 protein
STRINGORUFI05G20520.11e-122(Oryza rufipogon)
STRINGOS05T0460900-001e-122(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1905489
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.17e-23C2H2 family protein