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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g38460.1 | ||||||||
Common Name | Os05g0459000, OSNPB_050459000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 589aa MW: 64784 Da PI: 8.3763 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 58 | 95 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eEde+l +av + g++Wk+I qc +rwqk+ LOC_Os05g38460.1 58 KGGWTPEEDEKLRKAVDIYNGKNWKKI----E-----VQCLHRWQKV 95 688***********************5....3.....4577777775 PP | |||||||
2 | Myb_DNA-binding | 59.2 | 9.3e-19 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l LOC_Os05g38460.1 102 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.3 | 2.6e-16 | 154 | 197 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE+ l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++ LOC_Os05g38460.1 154 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 197 579*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.082 | 53 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-4 | 57 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-6 | 58 | 95 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-9 | 59 | 106 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.7E-16 | 60 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 30.661 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 101 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-17 | 102 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-15 | 104 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 107 | 150 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 151 | 203 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 153 | 201 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.856 | 153 | 203 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.0E-15 | 154 | 197 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-11 | 156 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MGAMPAVKVE EEEEERNPVA SSPSVSEGSA HAAALASPTA ADSIFGRRRK SGPVRRAKGG 60 WTPEEDEKLR KAVDIYNGKN WKKIEVQCLH RWQKVLDPEL IKGPWTQEED DVIINMVKKH 120 GPKKWSVIAR SLNGRIGKQC RERWHNHLDP QIRKEAWTVE EERVLARAHC MYGNKWAEIA 180 KLLPGRTDNS IKNHWNSSLR KKIDDYNTRD ILPVHPPVVG DGLKQLPKRP PADNHFDLNK 240 EPIICSRDRL GVVHSDPTSH QRASNLKDFK GCADYLSLGQ PVTSCEASAA DDSAFDLATQ 300 GMRMDSVHDK GTGNNFVCGK VQGINFLGDK GLKINQISDK MGCSRQAKRE GEAAINGGGS 360 SLQSEAHSVG SLCYQIPKME DIAPAQSPVF TANYVPEHSR NVMHSPNGYT TPPTHGKGSD 420 QLSVESILRS AAEKFHGTPS ILRRRKRDKP TPAEDNDLKI GRLSSDDFHT PIGKCTTDSP 480 QSFKTAALLS LGPMDEQGSL DVSPPYRLRS KRLAVLKTVQ NHLDFSSDEM SICDTTMKSA 540 CGNSDCANAS SGVSSIQGKK LDEHMIGLET LTMNFAHTTK LDATQPNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-64 | 57 | 203 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-64 | 57 | 203 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 442 | 449 | RRRKRDKP |
2 | 443 | 448 | RRKRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54784 | 0.0 | leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115464296 | 0.0 | ||||
Expression Atlas | Q0DHL1 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g38460.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g38460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106756 | 0.0 | AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637435.1 | 0.0 | transcription factor MYB3R-2-like | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | Q0DHL1 | 0.0 | Q0DHL1_ORYSJ; Os05g0459000 protein | ||||
STRING | OS05T0459000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 7e-96 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g38460.1 |
Publications ? help Back to Top | |||
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