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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g36100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 37064.1 Da PI: 4.9708 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.3e-20 | 163 | 212 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g LOC_Os05g36100.1 163 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 212 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-37 | 163 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-33 | 163 | 221 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.686 | 163 | 220 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 163 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-22 | 163 | 221 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-11 | 164 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.86E-14 | 171 | 222 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 186 | 202 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MADQRRRFRG GGDWQASVDD VVDDGGELEA AAAAAARGSV LSGEYQAQEM STMVSALTWV 60 VAAGHDDHGG GQWSGLVDVP ATTLAGGGGG DYGHGAQGSY YYYGAAPTST PEFVAGGQQE 120 QLSSDVPQGG ASLGLAMDEH SPTYTVEASS SADQHGGGGG GRRYRGVRQR PWGKWAAEIR 180 DPHKAARVWL GTFETAEAAA RAYDEAALRF RGSRAKLNFP EDARLSSPPA GAGAGGATAA 240 AQTVPVAYPA SAVSDYLQYQ MLLHGGGGGG GGRYPLYYGG GAAAAMSSSL GPYSSIPTSS 300 VTVASVPSSS SAASSSSGYG APAEHGEAVQ WTSWPDGGGW TYPATTSSWS GSSQYPPPPR 360 PPQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-24 | 161 | 220 | 3 | 63 | ATERF1 |
3gcc_A | 9e-24 | 161 | 220 | 3 | 63 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297724162 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g36100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g36100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC105318 | 0.0 | AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638449.2 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A2Y518 | 0.0 | A2Y518_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI05G19030.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17429 | 9 | 9 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-16 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g36100.1 |