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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g34730.1 | ||||||||
Common Name | LOC107277887, Os05g0420300, OSNPB_050420300, P0426G01.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 20067.4 Da PI: 9.8746 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 6.8e-16 | 18 | 63 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +y+GVr+++ +g+Wv+eIr+p + r r +lg++ tae Aa a++aa LOC_Os05g34730.1 18 RYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATAEAAAVAHDAAVC 63 59****777.**********943...5*******************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-23 | 18 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-23 | 18 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-9 | 18 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.796 | 18 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-15 | 18 | 66 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-9 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-9 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRVAASGGG GGGGEMMRYR GVRRRRWGKW VSEIRVPGTR ERLWLGSYAT AEAAAVAHDA 60 AVCLLRLGGG RRAAAGGGGG LNFPARALAA AAAASSYGGA GGLLSPRSVQ RVASDAGMAA 120 DAQLVDLRRD HPPAAAAASS SGSGVAGDGA RKQGTRGEVS DTYWCRNGED GSRSRSSGSE 180 ELIVYEGLSV DDMEILM* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q60DV7 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g34730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g34730 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124836 | 0.0 | AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence. | |||
GenBank | AC137623 | 0.0 | AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638993.1 | 1e-133 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9C9I8 | 3e-30 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | Q60DV7 | 1e-131 | Q60DV7_ORYSJ; Os05g0420300 protein | ||||
STRING | OS05T0420300-00 | 1e-132 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 1e-09 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g34730.1 |
Entrez Gene | 107277887 |
Publications ? help Back to Top | |||
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