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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g34600.1 | ||||||||
Common Name | P0426G01.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 418aa MW: 44660.6 Da PI: 6.7218 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158 | 4e-49 | 42 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + LOC_Os05g34600.1 42 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRG 133 79***************************.89***************7777899*************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +glkktLvfy+g+apkg++++W+m+eyrl LOC_Os05g34600.1 134 ENSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 167 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-57 | 41 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.849 | 41 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 43 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MSRDDVDDVT AGAAGSGEEA AADQEEAAAA VAGDSHENDL VMPGFRFHPT EEELIEFYLR 60 RKVEGRRFNV ELITFLDLYR FDPWELPAMA VIGEKEWFFY VPRDRKYRNG DRPNRVTASG 120 YWKATGADRM IRGENSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP AADADLFYKS 180 EISLCRVYKR SGIDDGHGHH QRPAGNVQAS SSSAAARPPE QHSGNNTAAG LPACRHRPSP 240 SSSSTTTAQQ HTSFHQLLQG ECSAAAAAPP PPPSLPASAT TRNSNASQLL MPPPPPRPPC 300 AAAYTSAAAA PTESAAVLAA ASTYSLLAAA GSSSTHIDEL STLLAGHSHG GAYGNNHIVA 360 GSHHHFPLPP SQLMPQLGTL PISPPLAAVS DKLWDWSSVP DTSTARDYDS SGFSDPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-55 | 43 | 191 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 43 | 191 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27216 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115463936 | 0.0 | ||||
Expression Atlas | Q60DW6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g34600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g34600 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134933 | 0.0 | AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence. | |||
GenBank | AC137623 | 0.0 | AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637953.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A0E0HEK3 | 0.0 | A0A0E0HEK3_ORYNI; Uncharacterized protein | ||||
TrEMBL | Q0DI41 | 0.0 | Q0DI41_ORYSJ; Os05g0418800 protein | ||||
TrEMBL | Q60DW6 | 0.0 | Q60DW6_ORYSJ; Putative no apical meristem (NAM) protein | ||||
STRING | ONIVA05G17420.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-95 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g34600.1 |