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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g27930.2 | ||||||||
Common Name | B1036C05.12, B1164G01.2, DREB2B, ERF42, LOC4338484, Os05g0346200, OsJ_18158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 32158.4 Da PI: 4.0206 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.7e-19 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p +++ r +lg+f tae Aa a+++a+++++g LOC_Os05g27930.2 12 CDFRGVRQRT-WGKWVAEIREP---NQQSRLWLGTFPTAEAAACAYDEAARAMYG 62 689****999.**********9...335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 12 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.26E-18 | 12 | 69 | No hit | No description |
SMART | SM00380 | 7.9E-35 | 13 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.272 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-20 | 14 | 70 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-31 | 14 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MKGKGGPENT RCDFRGVRQR TWGKWVAEIR EPNQQSRLWL GTFPTAEAAA CAYDEAARAM 60 YGPMARTNFG QHHAPAASVQ VALAAVKCAL PGGGLTASKS RTSTQGASAD VQDVLTGGLS 120 ACESTTTTIN NQSDVVSTLH KPEEVSEISS PLRAPPAVLE DGSNEDKAES VTYDENIVSQ 180 QRAPPEAEAS NGRGEEVFEP LEPIASLPED QGDYCFDIDE MLRMMEADPT NEGLWKGDKD 240 GSDAILELGQ DEPFYYEGVD PGMLDNLLRS DEPAWLLADP AMFISGGFED DSQFFEGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-13 | 14 | 69 | 6 | 62 | ATERF1 |
3gcc_A | 1e-13 | 14 | 69 | 6 | 62 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7718 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116632430 | 0.0 | ||||
Expression Atlas | Q5W6R4 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g27930.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g27930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134927 | 0.0 | AC134927.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1036C05, complete sequence. | |||
GenBank | AC134928 | 0.0 | AC134928.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1164G01, complete sequence. | |||
GenBank | AK071850 | 0.0 | AK071850.1 Oryza sativa Japonica Group cDNA clone:J023116E13, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | GU046790 | 0.0 | GU046790.1 Oryza sativa Japonica Group cultivar Dongjin-byeo putative DREB transcription factor 3 mRNA, complete cds. | |||
GenBank | JF915842 | 0.0 | JF915842.1 Oryza sativa dehydration responsive element binding protein 2B (DREB2B) gene, complete cds, alternatively spliced. | |||
GenBank | JF915843 | 0.0 | JF915843.1 Oryza sativa dehydration responsive element binding protein 2B isoform a (DREB2B) mRNA, complete cds, alternatively spliced. | |||
GenBank | JF915844 | 0.0 | JF915844.1 Oryza sativa dehydration responsive element binding protein 2B isoform b (DREB2B) mRNA, complete cds, alternatively spliced. | |||
GenBank | JF915845 | 0.0 | JF915845.1 Oryza sativa dehydration responsive element binding protein 2B isoform c (DREB2B) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639654.1 | 0.0 | dehydration-responsive element-binding protein 2B isoform X5 | ||||
Swissprot | Q5W6R4 | 0.0 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A0E0PL22 | 0.0 | A0A0E0PL22_ORYRU; Uncharacterized protein | ||||
TrEMBL | J7FAK1 | 0.0 | J7FAK1_ORYSA; Dehydration responsive element binding protein 2B isoform b | ||||
TrEMBL | J7FB46 | 0.0 | J7FB46_ORYSA; Dehydration responsive element binding protein 2B isoform a | ||||
STRING | ORUFI05G13560.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 8e-25 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g27930.2 |
Entrez Gene | 4338484 |
Publications ? help Back to Top | |||
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