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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g27930.1 | ||||||||
Common Name | B1036C05.12, B1164G01.2, DREB2B, ERF42, LOC4338484, Os05g0346200, OsJ_18158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 374aa MW: 40473.1 Da PI: 4.4881 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 87 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p +++ r +lg+f tae Aa a+++a+++++g LOC_Os05g27930.1 87 CDFRGVRQRT-WGKWVAEIREP---NQQSRLWLGTFPTAEAAACAYDEAARAMYG 137 689****999.**********9...335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.02E-17 | 87 | 144 | No hit | No description |
Pfam | PF00847 | 1.9E-12 | 87 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-35 | 88 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.272 | 88 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 89 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-20 | 89 | 145 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-31 | 89 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MTVDQRTTAK AIMPPVEMPP VQPGRKKRPR RSRDGPTSVA ETIKRWAELN NQQELDPQGP 60 KKARKAPAKG SKKGCMKGKG GPENTRCDFR GVRQRTWGKW VAEIREPNQQ SRLWLGTFPT 120 AEAAACAYDE AARAMYGPMA RTNFGQHHAP AASVQVALAA VKCALPGGGL TASKSRTSTQ 180 GASADVQDVL TGGLSACEST TTTINNQSDV VSTLHKPEEV SEISSPLRAP PAVLEDGSNE 240 DKAESVTYDE NIVSQQRAPP EAEASNGRGE EVFEPLEPIA SLPEDQGDYC FDIDEMLRMM 300 EADPTNEGLW KGDKDGSDAI LELGQDEPFY YEGVDPGMLD NLLRSDEPAW LLADPAMFIS 360 GGFEDDSQFF EGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 89 | 144 | 6 | 62 | ATERF1 |
3gcc_A | 2e-13 | 89 | 144 | 6 | 62 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7718 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116632430 | 0.0 | ||||
Expression Atlas | Q5W6R4 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g27930.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g27930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF915843 | 0.0 | JF915843.1 Oryza sativa dehydration responsive element binding protein 2B isoform a (DREB2B) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639655.1 | 0.0 | dehydration-responsive element-binding protein 2B isoform X6 | ||||
Swissprot | Q5W6R4 | 0.0 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A0E0PL22 | 0.0 | A0A0E0PL22_ORYRU; Uncharacterized protein | ||||
TrEMBL | J7FB46 | 0.0 | J7FB46_ORYSA; Dehydration responsive element binding protein 2B isoform a | ||||
STRING | ORGLA05G0107600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11515 | 30 | 37 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 7e-29 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g27930.1 |
Entrez Gene | 4338484 |
Publications ? help Back to Top | |||
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