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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g26026.1 | ||||||||
Common Name | Os05g0326500, Os05g0326800, OsJ_18082, OSNPB_050326500, OSNPB_050326800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 34617.8 Da PI: 7.1051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.5 | 1.8e-08 | 11 | 80 | 1 | 70 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyat 70 l pG++ +P+d+elv + L ++++g++l+l i e+d +++ Pw+L + +++ +e +f +k+ + +++ LOC_Os05g26026.1 11 LLPGLKLDPSDDELVGRCLLRRLQGQPLPLGGDILEADPLSApPPWNLLAD-HGRGDEAFFLAKKGNGKRQ 80 579***************************888999987776478***743.3455678877776554332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-10 | 4 | 82 | IPR003441 | NAC domain |
SuperFamily | SSF53098 | 2.4E-13 | 151 | 280 | IPR012337 | Ribonuclease H-like domain |
CDD | cd06222 | 8.43E-27 | 155 | 276 | No hit | No description |
PROSITE profile | PS50879 | 9.924 | 155 | 280 | IPR002156 | Ribonuclease H domain |
Pfam | PF13456 | 3.2E-35 | 156 | 278 | No hit | No description |
Gene3D | G3DSA:3.30.420.10 | 6.2E-5 | 157 | 279 | IPR012337 | Ribonuclease H-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090502 | Biological Process | RNA phosphodiester bond hydrolysis, endonucleolytic | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQPLPL GGDILEADPL SAPPPWNLLA 60 DHGRGDEAFF LAKKGNGKRQ RSSVEGQRMC VDGGRLRVPD DGRGGGGGLA FLPSIFPSPP 120 PVPRCSTPLS PSSPPFKPSR VIVRWWAPPG GWCKLNFDGS VYDDGSRRAS IGGVIRGCDG 180 GVVLAFAEIT EHWTVGVVEA RAMIRGLRLA LACFVERLVV EGDDLVLVQL IRGEETQTRI 240 PAAMHEEILD LLRCFADVEV RHIYREGNSM AHTLCRQAYV HPGLWTDCAT LPAAVWEKID 300 DDLRGVVHER LCNKKKKSSA * |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | B9FGQ2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g26026.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g26026 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134346 | 0.0 | AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence. | |||
GenBank | AC137748 | 0.0 | AC137748.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0076A09, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881581.1 | 1e-120 | uncharacterized protein LOC112939071 | ||||
TrEMBL | B9FGQ2 | 0.0 | B9FGQ2_ORYSJ; Os05g0326500 protein | ||||
STRING | ORGLA05G0101300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2550 | 7 | 13 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g26026.1 |