PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g25960.1
Common NameLOC107275325, Os05g0325300, OsJ_18075, OSNPB_050325300, P0018A03.14
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 568aa    MW: 60360.6 Da    PI: 3.7817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g25960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.31.8e-2471461128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dk 90 
                       l pG++F+P+d++lv +yL ++++g++l+l+ vi e+d +++ Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+ + +  d 
  LOC_Os05g25960.1   7 LLPGLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLLAD-HGRGDEAFFFAEAHAKNGKGKRQKRtVEGGGFWQGQNTcvDG 98 
                       579***************************999**************743.456789*******************555599**955442244 PP

               NAM  91 evlsk.........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                       e l+          +         + k +L f+  + ++g ++ Wvmhey++
  LOC_Os05g25960.1  99 ERLCVpddgdgsggG--GggleiAWRKYVLSFFA-NGERG-SSGWVMHEYAV 146
                       444445666655550..055565899999****4.44444.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-304165IPR003441NAC domain
PROSITE profilePS5100527.5727165IPR003441NAC domain
PfamPF023651.3E-149145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAAADGLLPG LKFDPSDHDL VGRYLLRRLQ GQPLPLDGVI LEADPLSAPP WKLLADHGRG  60
DEAFFFAEAH AKNGKGKRQK RTVEGGGFWQ GQNTCVDGER LCVPDDGDGS GGGGGGLEIA  120
WRKYVLSFFA NGERGSSGWV MHEYAVTAPD GLASSQLRLY RVRFSGYGKK RKREPQCPGA  180
HGDDDGELQC APPPRSMAET ALLEERGPLP HPVLGPASVV DQCTDQGSSG VIDDSSLVFR  240
DLPDLIDLPV AEEADASHGA ETALLNEHLP LPPPQLFVPP TAVPLDLADD SNGADQNSYG  300
MMGDDQLLLP DLPGTINDDM PDLFVSQAEE ASAVPAISYH SSGFMGNEVA ALSDFELPES  360
YSSSDAMDGE ALALSNYEFP ESFEEDLSCI DFATANASSL GFPMDGYPMD ELFDDMPDQG  420
SSGAMDDSSV VFRDLPGLIN LPAAEEADAI GDAETALLRD LADDSNGTDR NSYGVMGDDQ  480
DRLLLPEIPR RIDMPDLFVS QAEEAGLGGG AALDSSSGAM DGEALALSDF EFPESVEEVL  540
SCMDFSTVDM SFLDVPIDEL LDDLPAD*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5W6T5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g25960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g25960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.10.0uncharacterized protein LOC107275325
TrEMBLA0A0E0PKT70.0A0A0E0PKT7_ORYRU; Uncharacterized protein
TrEMBLQ5W6T50.0Q5W6T5_ORYSJ; Os05g0325300 protein
STRINGORUFI05G12850.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP9888212