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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g11414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 289aa MW: 32575.7 Da PI: 9.1827 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.4 | 1.2e-30 | 51 | 101 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+++fss+g+lyeys+ LOC_Os05g11414.1 51 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 101 79***********************************************95 PP | |||||||
2 | K-box | 105.2 | 8.1e-35 | 119 | 215 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 s+ + ++e +a+++qqe+akLk++i nLq+++R l+G+++++++++eL+qLe +L+k+l kiR++Knell+++ie++q++e elq++n++L++ LOC_Os05g11414.1 119 SNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKS 211 34444999************************************************************************************* PP K-box 97 klee 100 k++e LOC_Os05g11414.1 212 KVAE 215 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.212 | 43 | 103 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-39 | 43 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-32 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-32 | 45 | 116 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.68E-43 | 45 | 117 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 45 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-26 | 52 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-32 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-32 | 80 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-26 | 128 | 213 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.732 | 129 | 219 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MHIYKEQEAE PSTGLMMPEP APVASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ 60 VTFCKRRSGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS NNSVKETIER YKKANSDTSN 120 ASTVAEINAQ HYQQEAAKLK QQITNLQNSN RTLVGDNITT MNHRELKQLE GRLDKGLGKI 180 RARKNELLCA EIEYMQRRET ELQNDNMYLK SKVAESERGL QTVNMMGSAS TSEYVQNMIH 240 YDPRNFLQFN IMHQPQYYPE QEDRKAFMSG KKYSQCNIVR VHSSTNEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 2e-19 | 45 | 115 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 2e-19 | 45 | 115 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 2e-19 | 45 | 115 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 2e-19 | 45 | 115 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-19 | 45 | 130 | 2 | 90 | Myocyte-specific enhancer factor 2A |
5f28_A | 4e-19 | 45 | 130 | 3 | 91 | MEF2C |
5f28_B | 4e-19 | 45 | 130 | 3 | 91 | MEF2C |
5f28_C | 4e-19 | 45 | 130 | 3 | 91 | MEF2C |
5f28_D | 4e-19 | 45 | 130 | 3 | 91 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.48040 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 262093764 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in lodicules, stamens, carpels and ovules during their development. {ECO:0000269|PubMed:16326928}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the lodicule, stamen carpel and ovule primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g11414.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g11414 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB232157 | 0.0 | AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds. | |||
GenBank | FJ750942 | 0.0 | FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638060.1 | 0.0 | MADS-box transcription factor 58 isoform X1 | ||||
Swissprot | Q2V0P1 | 0.0 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A0D9ZVI2 | 0.0 | A0A0D9ZVI2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G06900.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 4e-94 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g11414.1 |