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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g11380.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 116aa MW: 12597 Da PI: 4.4509 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.6e-28 | 35 | 84 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie++ rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+ LOC_Os05g11380.2 35 SIEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84 8***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-24 | 26 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.525 | 26 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-24 | 28 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-26 | 34 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-25 | 36 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.70E-36 | 36 | 100 | No hit | No description |
PRINTS | PR00404 | 7.1E-24 | 48 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-24 | 63 | 84 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SEGSSIEDTA DRQVTFCKRC NGLLKKAYEL 60 SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNTSTVAEI NAQVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-17 | 27 | 94 | 2 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.85124 | 1e-179 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in lodicules, stamens, carpels and ovules during their development. {ECO:0000269|PubMed:16326928}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the lodicule, stamen carpel and ovule primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g11380.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g11380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135920 | 1e-113 | AC135920.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0015G13, complete sequence. | |||
GenBank | AP014961 | 1e-113 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-113 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881105.1 | 8e-80 | MADS-box transcription factor 58-like isoform X1 | ||||
Refseq | XP_025881106.1 | 8e-80 | MADS-box transcription factor 58-like isoform X2 | ||||
Swissprot | Q2V0P1 | 9e-60 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A0E0PIS3 | 2e-78 | A0A0E0PIS3_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AZ83 | 2e-78 | B8AZ83_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI05G07090.1 | 3e-79 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 5e-44 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g11380.2 |