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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g09020.1 | ||||||||
Common Name | Os05g0183100, OSNPB_050183100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 195aa MW: 21400.7 Da PI: 6.269 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.5e-30 | 95 | 153 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh LOC_Os05g09020.1 95 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDREDHRYVITTYDGVHNHA 153 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-32 | 83 | 155 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-27 | 87 | 155 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.422 | 90 | 155 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-34 | 95 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-23 | 96 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MAASVGLNPE AFFFSNSYSY SSSPFMASYT PEFSAAAIDA NLFSGELDFD CSLPAPAQEY 60 PENENTMMRY ESEEKMRARV NGRIGFRTRS EVEILDDGFK WRKYGKKAVK NSPNPRNYYR 120 CSTEGCNVKK RVERDREDHR YVITTYDGVH NHASPAAAAA ALQYAAAAGD YYSPPLSSAG 180 SPPAAYSAGG SLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-27 | 81 | 156 | 3 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-27 | 81 | 156 | 3 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.19621 | 1e-133 | leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116632997 | 1e-133 | ||||
Expression Atlas | A0A0P0WIN4 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g09020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g09020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832802 | 0.0 | CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638018.1 | 1e-142 | probable WRKY transcription factor 50 | ||||
TrEMBL | A0A0E0PIC8 | 1e-140 | A0A0E0PIC8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0WIN4 | 1e-140 | A0A0P0WIN4_ORYSJ; Os05g0183100 protein (Fragment) | ||||
TrEMBL | Q65WY5 | 1e-140 | Q65WY5_ORYSJ; Os05g0183100 protein | ||||
TrEMBL | Q6IEL4 | 1e-140 | Q6IEL4_ORYSI; WRKY transcription factor 67 | ||||
STRING | ORUFI05G05890.1 | 1e-141 | (Oryza rufipogon) | ||||
STRING | OS05T0183100-01 | 1e-141 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-39 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g09020.1 |