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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g04210.1 | ||||||||
Common Name | OsJ_17012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 33960 Da PI: 5.9504 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl LOC_Os05g04210.1 29 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 76 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ LOC_Os05g04210.1 82 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 125 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.199 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-31 | 27 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-17 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.38E-12 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 22.527 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-14 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 82 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 84 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.98E-10 | 86 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEMMRMAMSP AMSSATAAAA SEDEGDLRRG PWTVEEDMLL VDYIANHGEG RWNSLARCAG 60 LRRTGKSCRL RWLNYLRPDV RRGNITADEQ LLILDLHSRW GNRWSKIAQY LPGRTDNEIK 120 NYWRTRVQKH AKQLRCDVNS KEFRDVVRHV WMPRLIERIQ ADAAAAGEVA APAPVSAAAT 180 RSMSSPAGAM YLHHQQIPLA AGAMVVAPAV SSEAYHHHGC GGGGDTSCSE PSQAAVTMSP 240 DDASSTLRSS SAAAENDTIH GDVLSGSWSE LLATTTTTIA ATAGLPDFDE LGDFEDNLWS 300 LEDIWLHQQC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-25 | 26 | 123 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.76365 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116013024 | 0.0 | ||||
Expression Atlas | B9FGW2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g04210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g04210 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC118288 | 0.0 | AC118288.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077L08, complete sequence. | |||
GenBank | AK243659 | 0.0 | AK243659.1 Oryza sativa Japonica Group cDNA, clone: J100089B08, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638460.1 | 0.0 | transcription factor MYB2-like | ||||
TrEMBL | B9FGW2 | 0.0 | B9FGW2_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI05G02420.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-80 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g04210.1 |