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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g03760.1 | ||||||||
Common Name | LOC4337692, Os05g0128200, OSJNBa0056I11.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 602aa MW: 63235.9 Da PI: 8.4664 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.1 | 7e-09 | 257 | 278 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd C +aHg LOC_Os05g03760.1 257 PCPEFRKGGSCRKGDACEYAHG 278 8********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 5.6E-7 | 70 | 148 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.0E-9 | 71 | 166 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.337 | 71 | 168 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 12.502 | 106 | 141 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.2E-5 | 252 | 279 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 252 | 280 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 257 | 278 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 257 | 280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.559 | 288 | 312 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 89 | 288 | 311 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MCSGPRKPST PPLPQQQKEA TVMAASLLLE LAAADDVAAV RRVVEEEKVS LGVAGLWYGP 60 SASGVARLGM ERRTAAMVAA LYGSTGVLGY VVAAAPAEAA RASETDGATP LHMAAAGGAA 120 NAVAATRLLL AAGASVDALS ASGLRAGDLL PRATAAEKAI RLLLKSPAVS PSSSPKKSAS 180 PPSPPPPQEA KKEYPPDLTL PDLKSGLFST DEFRMYSFKV KPCSRAYSHD WTECPFVHPG 240 ENARRRDPRR YSYSCVPCPE FRKGGSCRKG DACEYAHGVF ECWLHPAQYR TRLCKDEVGC 300 ARRICFFAHK PDELRAVNPS AVSVGMQPTV SSPRSSPPNG LDMAAAAAAM MSPAWPSSPA 360 SRLKTALGAR ELDFDLEMLA LDQYQQKLFD KVSGAPSPRA SWGAAANGLA TASPARAVPD 420 YTDLLGSVDP AMLSQLHALS LKQAGDMPAY SSMADTTQMH MPTSPMVGGA NTAFGLDHSM 480 AKAIMSSRAS AFAKRSQSFI DRGGRAPAAR SLMSPATTGA PSILSDWGSP DGKLDWGVQG 540 DELHKLRKSA SFAFRGQSAM PVATHAAAAE PDVSWVNSLV KDGHAAGDIF AQWPEQEQMV 600 A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11774 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 217030946 | 0.0 | ||||
Expression Atlas | Q688R3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g03760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g03760 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130598 | 0.0 | AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence. | |||
GenBank | AK105767 | 0.0 | AK105767.1 Oryza sativa Japonica Group cDNA clone:001-202-E04, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | EU847522 | 0.0 | EU847522.1 Oryza sativa Japonica Group clone OsLS310 zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639743.1 | 0.0 | zinc finger CCCH domain-containing protein 33 | ||||
Swissprot | Q688R3 | 0.0 | C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | B7EYA7 | 0.0 | B7EYA7_ORYSJ; Zinc finger protein | ||||
STRING | OS05T0128200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6013 | 21 | 33 | Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-122 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g03760.1 |
Entrez Gene | 4337692 |
Publications ? help Back to Top | |||
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