![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os05g02420.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 22927.6 Da PI: 7.545 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 32 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T++E+ l+++++ q+G++ W++Iar ++ gRt++++k++w++++ LOC_Os05g02420.2 32 RGRITADEERLILHLHSQWGSR-WSRIARSLP-GRTDNEIKNFWRTHM 77 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-10 | 12 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.08E-21 | 12 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.31 | 13 | 26 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 22.894 | 27 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-15 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 32 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-11 | 36 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 39 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MDGAGGRPTG LKRTGKSCRL RWVNYLHPGL KRGRITADEE RLILHLHSQW GSRWSRIARS 60 LPGRTDNEIK NFWRTHMRKI AHHAKKKTNS PSPAPTTSSG SLSSSLTTAT TTMATAAALQ 120 ESSSCGGDDE AVDQLVAAAT TPASQLLTMD YTMDQLWNDI AAAEADTSCY DAAAMASPPS 180 PVWEFCTDYS LWRIDDEEYY KKMLDASQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-16 | 13 | 79 | 37 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.58260 | 0.0 | callus| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37988297 | 0.0 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os05g02420.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os05g02420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT829537 | 0.0 | CT829537.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA012K22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639553.1 | 1e-154 | transcription factor MYB48 | ||||
TrEMBL | A0A0E0H8M6 | 1e-145 | A0A0E0H8M6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G01120.1 | 1e-146 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46130.3 | 1e-42 | myb domain protein 48 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os05g02420.2 |