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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g01256.1 | ||||||||
Common Name | LOC4337537, Os05g0103000, OsJ_16787, OSNPB_050103000, P0036D10.20, P0668H12.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 36829.9 Da PI: 6.502 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.7e-09 | 190 | 237 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + + Y++sLq LOC_Os05g01256.1 190 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 237 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-17 | 184 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.75E-11 | 184 | 241 | No hit | No description |
PROSITE profile | PS50888 | 15.675 | 186 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-17 | 186 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 190 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 192 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MESLCGQLEH EHEQQLHQSS SSSLLPYCFL SAPEPLPVPG FPAGCSNLEE KAAAAMAAYE 60 YESSSCSSLD PTSMPMVYSP IVLQPQECPL SFVFDNAAAA AGDNKWVPGI QGSCPCSLGS 120 TQDMDASWGK SRKHKRSNVG LKGLEEKKAR RVVLHQHDDD VKKKAKEAAG GEPPAGYIHV 180 RARRGQATDS HSLAERVRRE KISERMKMLQ SLVPGCDKVT GKALMLDEII SYVQSLQNQV 240 EFLSMKLASL SPLMYEFGPG IDMHPDVLRQ LAKMPHEMVQ CMGQMGSTGI SLQGLGGGPT 300 GFAQDGSSHI NMVVMQVGEQ GQQQGSLHQV EMSSHCFFH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23082 | 0.0 | leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975882 | 0.0 | ||||
Expression Atlas | Q75M33 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g01256.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g01256 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065864 | 0.0 | AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640733.1 | 0.0 | transcription factor bHLH63 isoform X1 | ||||
Refseq | XP_015640734.1 | 0.0 | transcription factor bHLH63 isoform X1 | ||||
Refseq | XP_015640735.1 | 0.0 | transcription factor bHLH63 isoform X1 | ||||
Swissprot | Q93W88 | 4e-52 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | Q75M33 | 0.0 | Q75M33_ORYSJ; BHLH transcription factor | ||||
STRING | OS05T0103000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16793 | 12 | 12 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g01256.1 |
Entrez Gene | 4337537 |
Publications ? help Back to Top | |||
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