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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g58190.2 | ||||||||
Common Name | Os04g0678400, OSJNBa0064G10.24, OSNPB_040678400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 207aa MW: 21646.9 Da PI: 8.1155 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.4 | 9.8e-36 | 45 | 100 | 2 | 57 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 k+++l+cprC stntkfCyynnys+sqPr+fC+aCrryWt+GG+lr+vPvGg++r+ LOC_Os04g58190.2 45 KQQQLECPRCRSTNTKFCYYNNYSTSQPRHFCRACRRYWTHGGTLRDVPVGGASRR 100 7899*************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.5E-32 | 47 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.736 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-21 | 49 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAPAVASSPS LVLSAAAATA SNKRPADSDA SPPHQGDRTG QQEKKQQQLE CPRCRSTNTK 60 FCYYNNYSTS QPRHFCRACR RYWTHGGTLR DVPVGGASRR GGGGKRRRVS ADADPSSASP 120 PPPTTSTTDA YADLPAGFPF LSDGAFLPQF GLAGVAPAAF SWASAVPDLY NCGIAPWDDG 180 TAVTGAAWDN FADIAGLDLS WPPPGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 108 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.91628 | 0.0 | callus| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992733 | 0.0 | ||||
Expression Atlas | Q7FAN8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g58190.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g58190 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107524 | 0.0 | AK107524.1 Oryza sativa Japonica Group cDNA clone:002-129-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448779.1 | 2e-69 | dof zinc finger protein DOF5.8 | ||||
TrEMBL | A0A0D3G1R5 | 1e-147 | A0A0D3G1R5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZSH7 | 1e-147 | A0A0D9ZSH7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H7I9 | 1e-147 | A0A0E0H7I9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PFS6 | 1e-147 | A0A0E0PFS6_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XZ00 | 1e-147 | A2XZ00_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q259D3 | 1e-147 | Q259D3_ORYSA; H0402C08.16 protein | ||||
TrEMBL | Q7FAN8 | 1e-147 | Q7FAN8_ORYSJ; OSJNBa0064G10.24 protein | ||||
STRING | OGLUM04G29660.1 | 1e-148 | (Oryza glumipatula) | ||||
STRING | ORUFI04G31410.1 | 1e-148 | (Oryza rufipogon) | ||||
STRING | OS04T0678400-01 | 1e-148 | (Oryza sativa) | ||||
STRING | ONIVA04G28250.1 | 1e-148 | (Oryza nivara) | ||||
STRING | OBART04G29740.1 | 1e-148 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 2e-28 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g58190.2 |