PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g57530.1
Common NameLOC9266435, Os04g0670900, OSJNBa0043A12.37, OSNPB_040670900, sh4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 391aa    MW: 41437.2 Da    PI: 8.9829
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g57530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.41.3e-1667152271
          trihelix   2 WtkqevlaLiearremeerlrr.gk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                       Wt +e+l Li+a r +++r    g                +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ 
  LOC_Os04g57530.1  67 WTLHETLILITANRLDDDRRAGvGGaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 152
                       ************9966655553122345666677777777*****************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.59759139IPR017877Myb-like domain
PfamPF138371.7E-1066150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSGSSADPSP SASTAGAAVS PLALLRAHGH GHGHLTATPP SGATGPAPPP PSPASGSAPR  60
DYRKGNWTLH ETLILITANR LDDDRRAGVG GAAAGGGGAG SPPTPRSAEQ RWKWVENYCW  120
KNGCLRSQNQ CNDKWDNLLR DYKKVRDYES RVAAAAATGG AAAANSAPLP SYWTMERHER  180
KDCNLPTNLA PEVYDALSEV LSRRAARRGG ATIAPTPPPP PLALPLPPPP PPSPPKPLVA  240
QQQHHHHGHH HHPPPPQPPP SSLQLPPAVV APPPASVSAE EEMSGSSESG EEEEGSGGEP  300
EAKRRRLSRL GSSVVRSATV VARTLVACEE KRERRHRELL QLEERRLRLE EERTEVRRQG  360
FAGLIAAVNS LSSAIHALVS DHRSGDSSGR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302306KRRRL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XR48
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g57530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g57530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3833740.0DQ383374.1 Oryza sativa (indica cultivar-group) cultivar CL 16 shattering protein (sh4) mRNA, complete cds.
GenBankEF2032440.0EF203244.1 Oryza sativa (indica cultivar-group) shattering 1 (SHA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635337.10.0trihelix transcription factor ASR3
TrEMBLD9YVI10.0D9YVI1_ORYRU; Putative shattering protein
TrEMBLD9YVK90.0D9YVK9_ORYNI; Putative shattering protein
TrEMBLQ1PIH90.0Q1PIH9_ORYSI; Putative shattering protein
TrEMBLQ258Z10.0Q258Z1_ORYSA; H0624F09.7 protein
TrEMBLQ7XR480.0Q7XR48_ORYSJ; OSJNBa0043A12.37 protein
STRINGOS04T0670900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-41Trihelix family protein
Publications ? help Back to Top
  1. Thurber CS, et al.
    Molecular evolution of shattering loci in U.S. weedy rice.
    Mol. Ecol., 2010. 19(16): p. 3271-84
    [PMID:20584132]