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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g52410.2 | ||||||||
Common Name | OsJ_16140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27912.2 Da PI: 8.1821 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85 | 4.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr g+lKKA+EL +LCda++ vi+fs tgk+yeyss LOC_Os04g52410.2 9 KKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 59.1 | 1.9e-20 | 85 | 159 | 14 | 88 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 +++ qe++++k+e++ L+ R+++G+dL sL+l++ +Leqq+e sl k+R +K++ll +q+ e+ +e ++ LOC_Os04g52410.2 85 QQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSREMQIP 159 67889*****************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.23 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.58E-39 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 4.45E-30 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-17 | 81 | 159 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.885 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRGRVELKK IENPTNRQVT FSKRRMGLLK KANELAILCD AQIGVIVFSG TGKMYEYSSP 60 PWRIANIFDR YLKAPSTRFE EMDVQQRIIQ EMTRMKDENN RLRIIMRQYM GDDLASLTLQ 120 DVSNLEQQIE FSLYKVRLRK QQLLDQQLLE MHSREMQIPG DQSNYLCHMN LIGEQAQAPL 180 MVNPKPFPLW DVGGSSQMYN QDAESSMTAL QLSPQLEYKL QPLQPNLQEE ANLHGYVLRL 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 9e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 9e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 9e-17 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | B9FCG7 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g52410.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g52410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY177698 | 0.0 | AY177698.1 Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635703.1 | 1e-178 | MADS-box transcription factor 31 isoform X3 | ||||
Refseq | XP_015635704.1 | 1e-178 | MADS-box transcription factor 31 isoform X3 | ||||
Refseq | XP_015635705.1 | 1e-178 | MADS-box transcription factor 31 isoform X3 | ||||
Refseq | XP_025880955.1 | 1e-178 | MADS-box transcription factor 31 isoform X3 | ||||
Refseq | XP_025880956.1 | 1e-178 | MADS-box transcription factor 31 isoform X3 | ||||
Swissprot | Q84NC2 | 1e-110 | MAD31_ORYSJ; MADS-box transcription factor 31 | ||||
TrEMBL | B9FCG7 | 1e-177 | B9FCG7_ORYSJ; Uncharacterized protein | ||||
STRING | OBART04G25610.1 | 1e-174 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 5e-41 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g52410.2 |
Publications ? help Back to Top | |||
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