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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g52090.1 | ||||||||
Common Name | LOC4336947, Os04g0610400, OSJNBa0085I10.10, OSNPB_040610400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 22798 Da PI: 10.2507 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.4e-19 | 24 | 74 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp r +r++lg+f+tae Aa+a++ a++ ++g LOC_Os04g52090.1 24 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDSAALHFRG 74 689*******.**********8...2.35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.5E-13 | 24 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.70E-20 | 24 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 25 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.395 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 25 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-36 | 25 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MAPRNAAEAV AVAVAEGGGA GMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA 60 AARAYDSAAL HFRGPKAKTN FPVAFAHAHH HAPPPPLPKA AALAVVSPTS STVESSSRDT 120 PAAAPVAAAA KAQVPASPSL DLSLGMSAMV AAQPFLFLDP RVAVTVAVAA PVPRRPAVVS 180 VKKEVARLDE QSDTGSSSSV VDASPAVGVG LDLNLPPPIE EA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 26 | 83 | 6 | 64 | ATERF1 |
3gcc_A | 1e-20 | 26 | 83 | 6 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.59032 | 0.0 | callus| leaf| panicle| root| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7XPL6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g52090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g52090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606684 | 0.0 | AL606684.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633875.1 | 1e-152 | ethylene-responsive transcription factor 11 | ||||
TrEMBL | A0A0E0H5T5 | 1e-151 | A0A0E0H5T5_ORYNI; Uncharacterized protein | ||||
TrEMBL | Q7XPL6 | 1e-151 | Q7XPL6_ORYSJ; OSJNBa0085I10.10 protein | ||||
STRING | OS04T0610400-00 | 1e-152 | (Oryza sativa) | ||||
STRING | ONIVA04G24000.1 | 1e-152 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 6e-20 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g52090.1 |
Entrez Gene | 4336947 |