PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os04g51320.1

Common Name

OSJNBa0041A02.12

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 278aa MW: 32270.1 Da PI: 7.4606

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os04g51320.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.7	9.7e-26	21	106	1	86
trihelix 1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W qe+++Li+ar eme+++ ++ +++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+ LOC_Os04g51320.1 21 QWGAQETRELIAARGEMERESAAAaaarRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 106 7******************975223369*********************************99999974....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0047	18	84	IPR001005	SANT/Myb domain
CDD	cd12203	1.61E-16	20	89	No hit	No description
Pfam	PF13837	2.9E-22	21	107	No hit	No description
PROSITE profile	PS50090	7.282	22	82	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEPGCGEGGG GGGGRDERVP QWGAQETREL IAARGEMERE SAAAAAARRS AKTLWEAVSA 60 RLRERGYRRT AEQCKCKWKN LVNRYKGKET SDPENGRQCP FFDELHAVFT ERARTMQQQL 120 LESESGPSVK KKLKRPSGDL SSEDSDDEED GSGDSGDEKP IRSRKRKIAD KRQQSQRMAE 180 KSRTSISSIH ELLQDFLVQQ QRMDIQWHEM MERRSQERIV FEQEWRQSMQ KLEQERLMLE 240 HTWMEREEQR RMREEARAEK RDALLTTLLN KVLQEDL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.27946	0.0	stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32990929	0.0
Expression Atlas	Q7XTQ6	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os04g51320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os04g51320

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105720	0.0	AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence.
GenBank	AL606638	0.0	AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880753.1	0.0	uncharacterized protein LOC4336887
TrEMBL	Q7XTQ6	0.0	Q7XTQ6_ORYSJ; OSJNBa0041A02.12 protein
STRING	ORUFI04G25870.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	6e-28	Trihelix family protein

Link Out ? help Back to Top
Phytozome	LOC_Os04g51320.1