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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g47990.1 | ||||||||
Common Name | LOC9267486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 379aa MW: 37599.7 Da PI: 8.6719 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 74 | 135 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss LOC_Os04g47990.1 74 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 135 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 70 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 76 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDAAHWHQGL GLVKPMEEML MAANAAAGAN PNPAATAPSS VTGGALRGGG GGGAPPVAGG 60 AGAGSTERRA RPQKEKALNC PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRN 120 VPVGGGSRKN KRSSSSAASA SPASASTANS VVTSASMSMS MASTGGGASK NPKLVHEGAQ 180 DLNLAFPHHG GLQAPGEFPA FPSLESSSVC NPGGPMGTNG RGGGALSAME LLRSTGCYMP 240 LQVPMQMPAE YATPGFALGE FRAPPPPPQS SQSLLGFSLD AHGSVGGPSA AGFGSSAGLQ 300 GVPESTGRLL FPFEDLKPTV SSGTGGGGAS GGGAGVDGGH QFDHGKEQQA GGGGGGPGGH 360 DTPGFWNGMI GGGSGTSW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4182 | 0.0 | flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 4996639 | 0.0 | ||||
Expression Atlas | Q9SXG8 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g47990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9SXG8 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g47990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028129 | 0.0 | AB028129.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637008.1 | 0.0 | dof zinc finger protein 1 isoform X1 | ||||
Swissprot | Q9SXG8 | 0.0 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | A2XWJ0 | 0.0 | A2XWJ0_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA04G0190600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 2e-42 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g47990.1 |
Entrez Gene | 9267486 |
Publications ? help Back to Top | |||
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