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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g46400.1 | ||||||||
Common Name | DREB, LOC4336585, Os04g0549700, OSJNBb0034G17.2, OSNPB_040549700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 29618.3 Da PI: 5.0673 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.5e-19 | 116 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g LOC_Os04g46400.1 116 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 166 57*****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-13 | 116 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.93E-32 | 116 | 176 | No hit | No description |
PROSITE profile | PS51032 | 24.289 | 117 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-33 | 117 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 117 | 176 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-38 | 117 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MEADASHTPT TSSSVSVSFS SSSLSTSSST SSLVDNGAQD RPKSSKPKHA AKKRKRAAAE 60 EPANAAHGAG EDTSSCSTDD NAAASGKAQA GGGGGGVDSS STCTAASAPR SGFKHPSYRG 120 VRRRSWGKWV SEIREPRKKS RIWLGTFPTA EMAARAHDVA ALAIKGRNAH LNFPDSAHEL 180 PRPESTSPAD IQAAAAKAAA EVRCEEESSP SSSPTAEQPE EEAACPDTVH ADGGQDNALF 240 DLPDLLLDLR DGLWWSPVWP AALAAEEYDG GDAVVLNEPL LWAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 112 | 174 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 54 | PKHAAKKRK |
2 | 50 | 56 | AKKRKRA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54929 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992328 | 0.0 | ||||
Expression Atlas | Q7XU22 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g46400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g46400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107119 | 0.0 | AK107119.1 Oryza sativa Japonica Group cDNA clone:002-124-B03, full insert sequence. | |||
GenBank | AL663000 | 0.0 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY196209 | 0.0 | AY196209.1 Oryza sativa (japonica cultivar-group) transcription factor DREB (DREB) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635762.1 | 0.0 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q8LBQ7 | 4e-46 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q9ZQP3 | 1e-46 | ERF38_ARATH; Ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A0E0PCC3 | 0.0 | A0A0E0PCC3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0U1XP05 | 0.0 | A0A0U1XP05_ORYSI; Dehydration responsive element binding protein 4-2 | ||||
TrEMBL | Q7XU22 | 0.0 | Q7XU22_ORYSJ; AP2-EREBP transcription factor | ||||
STRING | ORUFI04G22400.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS04T0549700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g46400.1 |
Entrez Gene | 4336585 |
Publications ? help Back to Top | |||
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