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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g46250.1 | ||||||||
Common Name | LOC4336573, Os04g0547600, OsJ_15674, OSJNBa0065H10.3, OSJNBa0079A21.18, OSNPB_040547600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 34816.6 Da PI: 5.2234 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.7e-20 | 138 | 189 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++g+ LOC_Os04g46250.1 138 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 189 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 137 | 197 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.144 | 138 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 138 | 197 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-14 | 138 | 188 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.28E-29 | 138 | 197 | No hit | No description |
SMART | SM00380 | 5.5E-37 | 138 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-13 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-13 | 178 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MDFHHGDADD FALEFIREHL LGVDGATATA TEPADLEVVE PAAAYPPMSW QEQRQQEQHG 60 CHVELTDEHL ESAPAAEAAA AFRTAPAQPA AEVMIKFGGE PSPVRPSSSL TISLPPSSFG 120 SWASAAAPAA AAVEDFRKYR GVRQRPWGKF AAEIRDPKRR GSRVWLGTYD TPVEAARAYD 180 RAAFRMRGAK AILNFPNEVG TRGAELWAPP PPPPAHSAAA STTNKRKRQP SEDPDDGVEV 240 IGVVSKAVKT EAPTSNSSSL SSSLTSRDTT PATSSAGAEH AGAAAESSPA TPSSWSWEQY 300 WEALLGGLPP LSPLSPHPAL GFPQLTVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-26 | 137 | 201 | 4 | 68 | ATERF1 |
3gcc_A | 2e-26 | 137 | 201 | 4 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.82352 | 0.0 | leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994350 | 0.0 | ||||
GEO | 33440025 | 0.0 | ||||
Expression Atlas | Q7XAD5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g46250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g46250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109141 | 0.0 | AK109141.1 Oryza sativa Japonica Group cDNA clone:002-155-E09, full insert sequence. | |||
GenBank | AL607006 | 0.0 | AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence. | |||
GenBank | AL731613 | 0.0 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339379 | 0.0 | AY339379.1 Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635116.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A0E0PCA7 | 0.0 | A0A0E0PCA7_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q7XAD5 | 0.0 | Q7XAD5_ORYSJ; Ap26 | ||||
STRING | ORUFI04G22260.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS04T0547600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-32 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g46250.1 |
Entrez Gene | 4336573 |