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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g46220.1 | ||||||||
Common Name | DRE, LOC4336571, Os04g0546800, OSJNBa0079A21.16, OSNPB_040546800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 33140.8 Da PI: 4.7654 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 152 | 202 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f+tae+Aa a+++a+ +++g LOC_Os04g46220.1 152 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAALAYDRAAYRMRG 202 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.96E-30 | 151 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 151 | 210 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-14 | 152 | 202 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-39 | 152 | 216 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-23 | 152 | 212 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.276 | 152 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 153 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 176 | 192 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTARSMLRNH PEASVLDTIR QHLLEEPRGG GGGEAAEASF GSLVADMWSD SLPFRDDDAD 60 DMVVFGAMRD AFSCGWLPDG VFAEVKPEPL LSPDSSSYDG SSCCFGFADV SEPVTPSDAA 120 SGAAEAAAAA AAATAEHGKE EEAAAAVARG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL 180 GTFDTAEDAA LAYDRAAYRM RGSRALLNFP LRIGSEIAAA AAAAAAAAAG DKRPSPEPAT 240 SESSFSSSSS CTTTTTSSST SSSGSPKRRK RGEAAAASMS MPLVPPPSQL NWPVQAWYPA 300 AAPVEQVAIT PRVEQLVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-40 | 148 | 215 | 1 | 68 | ATERF1 |
3gcc_A | 6e-40 | 148 | 215 | 1 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11094 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297603127 | 0.0 | ||||
Expression Atlas | Q0JB99 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g46220.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g46220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243188 | 0.0 | AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence. | |||
GenBank | AL607006 | 0.0 | AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | EF061888 | 0.0 | EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636763.1 | 0.0 | ethylene-responsive transcription factor 2 | ||||
TrEMBL | Q0JB99 | 0.0 | Q0JB99_ORYSJ; Development related ERF protein | ||||
STRING | OS04T0546800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3800 | 29 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 5e-28 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g46220.1 |
Entrez Gene | 4336571 |
Publications ? help Back to Top | |||
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