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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g45810.1 | ||||||||
Common Name | HOX22, LOC4336542, Os04g0541700, OsJ_014981, OSJNBb0103I08.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 277aa MW: 30653.1 Da PI: 5.0075 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 74 | 127 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ LOC_Os04g45810.1 74 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 127 458**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.1 | 3.2e-40 | 72 | 165 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+ +l+ LOC_Os04g45810.1 72 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLH 164 69******************999******************************************************************9998 PP HD-ZIP_I/II 93 e 93 e LOC_Os04g45810.1 165 E 165 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.51E-18 | 63 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 68 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-20 | 71 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-17 | 73 | 130 | No hit | No description |
Pfam | PF00046 | 4.3E-17 | 74 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-20 | 74 | 136 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.1E-7 | 100 | 109 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.1E-7 | 109 | 125 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.6E-14 | 129 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MNGRTQLASW ARIAMDRGDH HHLQQQHQFL MPPPAPVVPP QLCMPAMMAD EQYMDLGGGG 60 AAAAPGRGGA GERKRRFTEE QIRSLESMFH AHHAKLEPRE KAELARELGL QPRQVAIWFQ 120 NKRARWRSKQ LEHDYAALRS KYDALHSRVE SLKQEKLALT VQLHELRERL REREERSGNG 180 GAATTAASSS SCNGSGSEEV DDDDDKRNAA AGCLDLEPPE SCVLGGATCA TPADVSVESD 240 QCDDQLDYDE GLFPESFCAT PELWEPWPLV EWNAVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12134 | 0.0 | callus| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994386 | 0.0 | ||||
Expression Atlas | Q7XUJ5 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g45810.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q7XUJ5 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g45810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224440 | 0.0 | AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634133.1 | 0.0 | homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q01IK0 | 0.0 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 0.0 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A0D3FYH6 | 0.0 | A0A0D3FYH6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZNQ2 | 0.0 | A0A0D9ZNQ2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H3R1 | 0.0 | A0A0E0H3R1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PC66 | 0.0 | A0A0E0PC66_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PNG8 | 0.0 | I1PNG8_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM04G20240.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI04G21910.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA04G18550.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA04G0173700.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART04G20320.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 | Representative plant | OGRP14821 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 8e-35 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g45810.1 |
Entrez Gene | 4336542 |
Publications ? help Back to Top | |||
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