PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g36790.1
Common NameLOC4335961, Os04g0445600, OSJNBa0027P08.13, OSNPB_040445600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 418aa    MW: 43926.2 Da    PI: 7.0386
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g36790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.63.3e-1368149286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ +++g+ +   s +qCk++++ l+k+yk +++   +       ++++f +l+
  LOC_Os04g36790.1  68 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFGRLD 149
                       *************************************87888866222667**************99988876.......488888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2266151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDDDDAAASA SPSPSPSPVA SALPVADPVT VAAGPPSGLL ALALPIQKQQ HAASPNPGGG  60
GGGREDAWSE GATAALIDAW GERFVALGRG SLRHPQWQEV ADAVSSREGY AKAPKSDVQC  120
KNRIDTLKKK YKIERAKPAS SWQFFGRLDD LLAPTFNQKP GGNGGGGVGA SVNGRNPVPA  180
ALRVGFPQRS RTPLMPAPVS AVKRRAPSPE PSASSESSDG FPPERQPAFP PLPLPPPPNG  240
KRSRADEGRG GGAGGGGDRA QGLRELAQAI RRFGEAYERV ETAKLEQSAE MERRRLDFAS  300
ELESQRVQFF LNTQMELSQV KDHSSSPANA AAPPGATGGA GGTSRRMASV NDASASGNYH  360
RRYRVSDGGR HRHHPQPPPS RPHYQYHENN IAVAAAAAAS DGEQSSDEED DEEEESQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.597590.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166318130.0
Expression AtlasQ7XRK9-
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g36790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g36790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315930.0AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633896.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG89e-38ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0E0P9Q70.0A0A0E0P9Q7_ORYRU; Uncharacterized protein
TrEMBLQ7XRK90.0Q7XRK9_ORYSJ; OSJNBa0027P08.13 protein
STRINGORUFI04G15270.10.0(Oryza rufipogon)
STRINGOS04T0445600-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-32sequence-specific DNA binding transcription factors