![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g27990.1 | ||||||||
Common Name | Os04g0347400, Os04g0347500, OsJ_14357, OSJNBa0020I02.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 12860.6 Da PI: 6.5073 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.7 | 4.9e-14 | 21 | 123 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 kvl+ps+ +k ++++ + a++ gg +++ ++ ++ g++W+v++ ++ +g+ +l++GW eF+ a+gL g fvv LOC_Os04g27990.1 21 KVLMPSSFHK---MRISDELAADLlgergdgggggGGAPRR--AARVVSPVGKVWDVEVGRddDGDGGGAFLGRGWAEFAAAHGLGMGWFVVV 108 5666666555...5688888877788888888876555544..69999***********6655666666************************ PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 +++g ++ l+vk+f++ LOC_Os04g27990.1 109 RHEG--GGVLTVKLFDT 123 *755..7778***9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-14 | 18 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.6E-6 | 19 | 124 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-15 | 20 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.6E-11 | 21 | 123 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.71E-9 | 21 | 122 | No hit | No description |
PROSITE profile | PS50863 | 9.996 | 67 | 124 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence Send to blast |
MPGDHAGAGA AVGAAKAMQL KVLMPSSFHK MRISDELAAD LLGERGDGGG GGGGAPRRAA 60 RVVSPVGKVW DVEVGRDDDG DGGGAFLGRG WAEFAAAHGL GMGWFVVVRH EGGGVLTVKL 120 FDTTCCL* |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q7XS74 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g27990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g27990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL662963 | 1e-162 | AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence. | |||
GenBank | AP014960 | 1e-162 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880727.1 | 5e-58 | LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS74 | 2e-83 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | B8ASH1 | 5e-81 | B8ASH1_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI04G09430.1 | 9e-82 | (Oryza rufipogon) | ||||
STRING | ONIVA04G06710.1 | 9e-82 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 | Representative plant | OGRP10106 | 4 | 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g27990.1 |