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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os04g02730.1 |
Common Name | Os04g0117600, OSNPB_040117600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
C3H |
Protein Properties |
Length: 697aa MW: 77529.9 Da PI: 7.7844 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os04g02730.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 115 | 127 | 14 | 26 |
--TTTTT-SS-SS CS
zf-CCCH 14 tCkyGdrCkFaHg 26
CkyGd+C+F+H+
LOC_Os04g02730.1 115 SCKYGDSCRFSHD 127
7***********6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0002943 | Biological Process | tRNA dihydrouridine synthesis |
GO:0055114 | Biological Process | oxidation-reduction process |
GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity |
GO:0046872 | Molecular Function | metal ion binding |
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
Protein Sequence Length: 697 aa
Download sequence Send
to blast |
MPHCLLTAPQ PWPPPPPPPP RRLPPTRRTP PRPLPPLRGP ARRSWSPVQW PPSSPPSSAR 60 PLSATPPKDE GKANGGGAVV AEKKSKRQLK RERKQEQKSS SHLCIEVGKS GNVSSCKYGD 120 SCRFSHDIDA YLAQKPADLE GTCPFTNLDQ LCPYGLTCRF LGTHKDIHAA SGNLSEKHEI 180 NALNKDIQKL LWKNKYKFPK ASAQIKLLGL KEVIKSKPDA ANDDKKVNHD NLDGNDDENK 240 EPLCNPPVNA ECDSTLCEEL DRSEGEPLID NSIPCVEPRP TKKSKVESDE IDKHGAGTLN 300 TNTESEDPNL SNGLEPSNNS SSCRTDLITT PHLREKKIID FREKLYLAPL TTVGNLPFRR 360 LCKTLGADIT CGEMAMCTNL LQGQASEWAL LRRHSSEDLF GVQICGAYPD TVARTVELVD 420 NECSVDFIDI NMGCPIDIVV NKGAGSSLLT KPMRIKSIVQ AASTVTEKPL TVKVRTAFFE 480 GRNRADSIVS DIYDWGASAI TVHGRSRQQR YSKLADWDYI YQCAQKAPDQ LHVVGNGDVF 540 SFTDWNKHVS GCSKISTSMI ARGALIKPWI FTEVKEQRHW DITSGERFNI LKDFVSFGLE 600 HWGSDSKGVE TTRYFLLEWL SYTCRYIPVG LLDVIPQRLN WRPPSYCGRD DLETLMISDS 660 AADWIRISEM LLGKVPEGFT FTPKHKSNAY DRAENG*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Os.7618 | 0.0 | callus| flower| leaf| panicle| root| stem| vegetative meristem |
Functional Description ? help
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Source |
Description |
UniProt | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK111699 | 0.0 | AK111699.1 Oryza sativa Japonica Group cDNA clone:J023009K15, full insert sequence. |