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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g02140.1 | ||||||||
Common Name | Os04g0112200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | E2F/DP | ||||||||
Protein Properties | Length: 495aa MW: 53766.6 Da PI: 4.7855 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 82.6 | 3.2e-26 | 193 | 258 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++lle +e+g+++ln++a++L +v ++RRiYDi+NVLe+++liek+ kn irwkg LOC_Os04g02140.1 193 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 258 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01217 | 1.1E-9 | 8 | 24 | No hit | No description |
PRINTS | PR01217 | 1.1E-9 | 33 | 45 | No hit | No description |
PRINTS | PR01217 | 1.1E-9 | 54 | 75 | No hit | No description |
PRINTS | PR01217 | 1.1E-9 | 80 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 6.1E-28 | 190 | 259 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-16 | 193 | 256 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 7.7E-34 | 193 | 258 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.3E-23 | 195 | 258 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.91E-33 | 299 | 405 | No hit | No description |
SuperFamily | SSF144074 | 2.07E-23 | 299 | 404 | No hit | No description |
Pfam | PF16421 | 2.1E-23 | 299 | 402 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MDGSAAIPPR PAPTPPAPAP APPQVFLRRS VLPPPPAPHH APPPPGAHVH YFRAASPIPI 60 FRAAASSRPP RPPPPSTTTA PPPPAAPAVT PARPPPQQPA VAVAAPPPAT TMATATEEVA 120 APATGNPMAN AADNEEKNER ETVQSEVAKG ETVQGPDKEC TTGAVKGIKR PRKPKGFKKG 180 DAGPSLFSPN NCRYDSSLGL LTKKFINLLE GAEDGTLDLN KAAETLEVQK RRIYDITNVL 240 EGVDLIEKTL KNMIRWKGFD MSKPKERERQ ISALKLLELN SITMTVTVPF YVPSKETMEE 300 IESLYDEESR LDDEIMEAQE KLNALRVDED RRKLLYVSKE DINAIPRFQG STLIAVNAPR 360 GTYIEVPDPN LDMDIYKDLD NQEKHYQIVF RSAMGPVDCF LISNHQETFN ADQQMADNLD 420 AAVTSGSSQA PQQMDYVQAS EIGESNGVRE HTSEPSKRDD PVPGIVKIVP SDDIAADYWL 480 SSDADVSMTD TWGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 7e-20 | 193 | 258 | 7 | 73 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.60730 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | C7J1I3 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g02140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g02140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606612 | 0.0 | AL606612.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0021I10, complete sequence. | |||
GenBank | AL606616 | 0.0 | AL606616.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633977.1 | 0.0 | transcription factor E2FC | ||||
TrEMBL | C7J1I3 | 0.0 | C7J1I3_ORYSJ; Os04g0112200 protein | ||||
STRING | ORUFI04G00690.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 | Representative plant | OGRP14780 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 1e-75 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g02140.1 |