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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g63810.1 | ||||||||
Common Name | LOC4334831, Os03g0855100, Os03g63810, OsJ_13422, OSNPB_030855100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 388aa MW: 41697.7 Da PI: 7.2789 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.8e-31 | 199 | 257 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY eHnh+ LOC_Os03g63810.1 199 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYAAEHNHP 257 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 33.017 | 193 | 259 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-30 | 196 | 259 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-26 | 197 | 259 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 198 | 258 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 200 | 257 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPMPQAPHQ 60 YYPAPQITIP YHHHHHGELR RPTTIAYTDA PVPFETAGPP STVVDSYHHL TPGDAGYGMP 120 RPLALQISQH ALCGGGDVVM GGGGAGAADD GEEAIRISPL TPSAHHQMMK RKNEVKKVVC 180 IPAPPATSSR GGGGEVIPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC MARKQVERSR 240 SDPNMLVITY AAEHNHPWPM QRNVLAGYAR SHHSTHATAS SSRHKQQQQQ QTNQLQPALI 300 TSSSSSSSSP FNLYADVVLG GQQANMMMTT EGAGAGLGIQ PSAADEVFAE LEELEPDNPT 360 MINANMQVYS TTSRPGVSSY DHQWHKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-24 | 172 | 259 | 2 | 79 | Disease resistance protein RRS1 |
5w3x_D | 3e-24 | 172 | 259 | 2 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32995004 | 0.0 | ||||
Expression Atlas | Q84T64 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g63810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g63810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109795 | 0.0 | AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630180.1 | 0.0 | uncharacterized protein LOC4334831 | ||||
Swissprot | O64747 | 5e-55 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A0E0P434 | 0.0 | A0A0E0P434_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8ANR2 | 0.0 | B8ANR2_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q84T64 | 0.0 | Q84T64_ORYSJ; Os03g0855100 protein | ||||
STRING | ORUFI03G43260.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS03T0855100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13466 | 28 | 32 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 2e-54 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g63810.1 |
Entrez Gene | 4334831 |
Publications ? help Back to Top | |||
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