![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g62660.2 | ||||||||
Common Name | OsJ_13332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 736aa MW: 83418.6 Da PI: 6.0331 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 58.4 | 2.4e-18 | 42 | 126 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA ++GF v+++ks+ + + g + + +vC+k+g +e+ + r++ +t+C+a+++ ++++dg ++++++leHnH+l+p LOC_Os03g62660.2 42 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGDGKEDACY-----QARPTAKTNCQATVVARLWSDGLLHLMDVNLEHNHALNP 126 6*****************9998.6777****************9999.....999*********************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-16 | 42 | 126 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.0E-26 | 229 | 321 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.285 | 510 | 546 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.002 | 521 | 548 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 736 aa Download sequence Send to blast |
MVDAAAAAAE CGELDGTDAM AYGDDRTPRD GMVFKSYEEV LNFYKRYALR TGFGVCVKKS 60 SFTKAGLCRR LVLVCNKWGD GKEDACYQAR PTAKTNCQAT VVARLWSDGL LHLMDVNLEH 120 NHALNPSAAR FLRCYKTLPS GMSKDLVVRA ARGECSTSGD IEVPIFDDWG RLKIGEDDVA 180 AINGFFADMQ AKQANFFYLM DFYGEGHLRS VFWADSRSRA AYQYFNDAVW IDTTCLRNRF 240 DTPLVLFLGV NHHGELVLLG CGLFSDESTE SFLWLLKSWL TCMKGWPPNA IVTDDCAAIK 300 AAVREVFPNA RHRISDWHVL RSISEKLGES AQFEGMKTEL ETVIYDSLKD DEFEARWNNL 360 ISRFGLQDNE WITFLYENRH FWVPAFLKDT FWAGLSTVNH HESPNAFFED SINPETKLVT 420 FLSSYVNLLQ NKYKMEEDDD LESLSRSRVL VSKFPMEEQL SRLYTFKMFT KLQNELNATM 480 NCEVQLDDST SSIVVIDLAE SSGEMVNKKY EVVHCMETDR MECNCGLFQF SGIVCRHTLS 540 VLKCQHVFDI PPCYVLNRWR NDFKQLHALD NPWKDLVTSN HIERYDYVSL QCLRLVEIGA 600 SSDEKHQHAL KLIRDIRRTL LDDNLCRELE QKLTPSERAI NGDSHMQAGS SEGGPAKKRR 660 GRPPKKSKDT NVESVSNQYA HKDSLLVSSD VSQKDAFHSS STASNLGTHV RTNGVVDLMV 720 VIMIDAGFCS VHCLV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.17361 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32980388 | 0.0 | ||||
Expression Atlas | A3APM9 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g62660.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g62660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK070364 | 0.0 | AK070364.1 Oryza sativa Japonica Group cDNA clone:J023050I08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629688.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_015629689.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_015629690.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A2XNY4 | 0.0 | A2XNY4_ORYSI; Uncharacterized protein | ||||
TrEMBL | A3APM9 | 0.0 | A3APM9_ORYSJ; Uncharacterized protein | ||||
STRING | OS03T0843700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-113 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g62660.2 |