PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g61650.1
Common NameOs03g0832000, OSJNBa0078D06.26, OSJNBb0027B08.1, OSNPB_030832000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 365aa    MW: 38297 Da    PI: 4.4502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g61650.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.43.6e-1261443127
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy. 82 
                       +G+ F+P+d++l + yL+  + +++       +++ ++ +d+y++ P +L +       + +++ + wy F++ +   ++g rk r++  g  
  LOC_Os03g61650.1   6 KGLVFSPSDDQLTDGYLRSYLVRTSlddlpSAATSYFHVADVYSAPPDQLVAglapapgTGDGDGRVWYVFTPVRVLGSRGARKARTVGGGCg 98 
                       6999***************998888667643333459999**********7456776654455778********************9997766 PP

               NAM  83 ..WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyr 127
                         W+a g  k+v+   +++ g  + + +  k      +k  W+m e++
  LOC_Os03g61650.1  99 ecWHAEGGPKDVKG--SAAGGKLQKFSYKiKTALGAVVKPGWLMVEFS 144
                       67**********87..666677777888733344555799******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-224159IPR003441NAC domain
PROSITE profilePS5100519.2184159IPR003441NAC domain
PfamPF023655.2E-87144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAEIGKGLVF SPSDDQLTDG YLRSYLVRTS LDDLPSAATS YFHVADVYSA PPDQLVAGLA  60
PAPGTGDGDG RVWYVFTPVR VLGSRGARKA RTVGGGCGEC WHAEGGPKDV KGSAAGGKLQ  120
KFSYKIKTAL GAVVKPGWLM VEFSFPGSDH LALCKVYRSP RTSRYGAPSP PSSAASSPSR  180
AAPPPVSSTS GRKRKAEEES DHPEAPASSA PRRTLPASEQ HVDVDAAAAS EPDQGGYLST  240
DQLDSVAAFV QEHEAFVQEH EGDEEFCKSL GFDERSDPQC WTNFFLSALE EFGPAPETDA  300
AAVAVAAVEP GPCPEYEEHD DTATTAASSH AYDSATAELV NLSDKEFYDI IFSGDQQGGA  360
AVAG*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ851A4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g61650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g61650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1333390.0AC133339.3 Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence.
GenBankAC1337780.0AC133778.4 Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0P3H70.0A0A0E0P3H7_ORYRU; Uncharacterized protein
TrEMBLA2XNP40.0A2XNP4_ORYSI; Uncharacterized protein
TrEMBLQ851A40.0Q851A4_ORYSJ; Os03g0832000 protein
STRINGORUFI03G41610.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545
Representative plantOGRP1189925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-09NAC domain containing protein 90