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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g60080.1 | ||||||||
Common Name | LOC4334553, NAC, Os03g0815100, OsJ_13092, OSJNBa0024F18.3, OSNPB_030815100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 35177.8 Da PI: 7.1466 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.4e-52 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+yk++PwdLp+++ + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v LOC_Os03g60080.1 17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA 108 79****************************.88***************8777899*************************************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl LOC_Os03g60080.1 109 P-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-65 | 11 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.377 | 17 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-27 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGMGMRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYKFDPW 60 DLPERALFGA REWYFFTPRD RKYPNGSRPN RAAGNGYWKA TGADKPVAPR GRTLGIKKAL 120 VFYAGKAPRG VKTDWIMHEY RLADAGRAAA GAKKGSLRLD DWVLCRLYNK KNEWEKMQQG 180 KEVKEEASDM VTSQSHSHTH SWGETRTPES EIVDNDPFPE LDSFPAFQPA PPPATAMMVP 240 KKESMDDATA AAAAAATIPR NNSSLFVDLS YDDIQGMYSG LDMLPPGDDF YSSLFASPRV 300 KGTTPRAGAG MGMVPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-127 | 3 | 176 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26695 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q75HE5 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g60080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g60080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067690 | 0.0 | AK067690.1 Oryza sativa Japonica Group cDNA clone:J013120D02, full insert sequence. | |||
GenBank | AK099245 | 0.0 | AK099245.1 Oryza sativa Japonica Group cDNA clone:J013116P10, full insert sequence. | |||
GenBank | AK104551 | 0.0 | AK104551.1 Oryza sativa Japonica Group cDNA clone:006-305-E06, full insert sequence. | |||
GenBank | AK104712 | 0.0 | AK104712.1 Oryza sativa Japonica Group cDNA clone:001-037-H04, full insert sequence. | |||
GenBank | AY596808 | 0.0 | AY596808.1 Oryza sativa (japonica cultivar-group) NAC transcription factor (NAC) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630558.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q75HE5 | 0.0 | NAC2_ORYSJ; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0K0KVC6 | 0.0 | A0A0K0KVC6_ORYRU; SNAC1 protein | ||||
TrEMBL | A0A0K0KVC9 | 0.0 | A0A0K0KVC9_ORYSI; SNAC1 protein | ||||
TrEMBL | A0A0K0KVM8 | 0.0 | A0A0K0KVM8_ORYNI; SNAC1 protein | ||||
STRING | OS03T0815100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4414 | 30 | 71 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 1e-80 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g60080.1 |
Entrez Gene | 4334553 |
Publications ? help Back to Top | |||
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