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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g56110.1 | ||||||||
Common Name | Os03g0771500, OSH43, OSJNBa0072F13.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 342aa MW: 37235.8 Da PI: 6.7998 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 253 | 287 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps+ e+ LA+ +gL+++q+ +WF N+R ++ LOC_Os03g56110.1 253 KWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 287 569*****************************885 PP | |||||||
2 | ELK | 37.6 | 4.7e-13 | 207 | 228 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LKhqLlrKY+g+Lg+L+q Fs LOC_Os03g56110.1 207 QLKHQLLRKYGGSLGDLRQVFS 228 59*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.4E-19 | 81 | 125 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.6E-19 | 82 | 121 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-24 | 136 | 188 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-18 | 146 | 186 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.3E-5 | 207 | 228 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.8E-8 | 207 | 225 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.324 | 207 | 227 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.503 | 227 | 290 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-11 | 229 | 294 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-18 | 229 | 294 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.44E-13 | 230 | 290 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-27 | 232 | 290 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.7E-17 | 247 | 286 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 265 | 288 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MESFASLAGG GSSSTTARLP ELISPENPDH ISPPPLLYQL LAGPESSARQ HGHDGHHHGG 60 GGGEAAAAAV QGQVSPAGAE AAVKAEIMSH PQYSALLAAY LGCKKVGAPP DVLTKLTAVP 120 AAQQLDEADG HPRRRHEPQR DDDPDQLDQF MDAYCSMLTR YREELERPIL EAAEFFSRVE 180 TQLDSLAESN CEGTGSSEEE QDPSDKQLKH QLLRKYGGSL GDLRQVFSKR TKKGKLPKEA 240 RQKLLHWWEL HYKWPYPSEM EKMTLAQTTG LDQKQINNWF INQRKRHWKP TPVAGTAFPT 300 MEAAGGGFRH SGHGGGLAAA AALPLYMGRP FVVDGMYRLG S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.57551 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5103726 | 0.0 | ||||
Expression Atlas | Q10ED2 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in globular stage embryo 3 days after pollination (DAP) in a small region just below the center of the ventral portion of the embryo. At coleoptile stages, mainly expressed in the basal and central parts of the ventral side of the embryo, in cells just below the coleoptile, and corresponding to the epiblast and part of the shoot region. At the shoot apex differentiation stage, expressed in the shoot apical meristem (SAM) and the epiblast, but not in the region between the SAM and epiblast. Expressed also in the cells surrounding the ventral side of the root apical meristem. Expression pattern is maintained in subsequent stages after the second leaf primordium is formed. During inflorescence development, expressed only in the corpus of the rachis primordium, but not in the tunica layer (L1). After floral induction, expressed in both tunica and corpus, but not in floral organ primordia. Later in flower development, expression in the corpus of the floral meristem disappears. {ECO:0000269|PubMed:10488233}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g56110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g56110 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028884 | 0.0 | AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879466.1 | 0.0 | homeobox protein knotted-1-like 8 isoform X1 | ||||
Swissprot | Q10ED2 | 0.0 | KNOS8_ORYSJ; Homeobox protein knotted-1-like 8 | ||||
TrEMBL | B9F5X4 | 0.0 | B9F5X4_ORYSJ; Uncharacterized protein | ||||
STRING | OBART03G35680.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14756 | 13 | 21 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 4e-68 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g56110.1 |
Publications ? help Back to Top | |||
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