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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g52239.1 | ||||||||
Common Name | LOC9266975, Os03g0732100, OSNPB_030732100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 791aa MW: 81918.6 Da PI: 6.9481 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.8e-09 | 581 | 618 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + LOC_Os03g52239.1 581 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 618 564459******************************88 PP | |||||||
2 | BELL | 119.9 | 1.2e-38 | 442 | 512 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q+kkakL+s+l+eVd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+ LOC_Os03g52239.1 442 RFEHQRKKAKLISMLDEVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 512 779*****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.2E-69 | 368 | 510 | IPR006563 | POX domain |
Pfam | PF07526 | 4.1E-53 | 373 | 509 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.6 | 559 | 622 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.58E-13 | 562 | 623 | No hit | No description |
SMART | SM00389 | 1.6E-9 | 562 | 626 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.69E-17 | 564 | 629 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 565 | 628 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.0E-18 | 579 | 618 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 791 aa Download sequence Send to blast |
MGIAAPPCQP GQTTTFVISQ PTSSKSSPAA IVVRPPATAS SSSMSHSQGF HQPSSGAVFG 60 FSSDGFDGRP GSGQDHQQHE QQQQQHVAQQ SRRDKLRVQG FDPAAAAAGH GLLPIEGDEH 120 GAEPGAMYDH AEAAAAGASN MLSEMFNFPS QPPTGPSATE LLASQMNANY RFGFRQAAGL 180 AGGEGGWFGG GGAAGRTGLV LGGASLGSLG ETSSPKQQAS GMAGLAADPA AAMHLFLMNP 240 QQQQQQQSRS STSPPPSDAQ SAIHQHHEAF QAFGGAGAAA FGGGAAAGVV EGQGLSLSLS 300 PSLQQLEMAK QAEELRVRDG VLYFNRQQQQ QQAAAAAASV QQQLPMALHG QVGVLGQQLH 360 GGGYGGPAGV AGVLRNSKYT RAAQELLEEF CSVGRGQIKG GGGRGSAPNN PNSSKAAASS 420 SGAAQSPSSA SKEPPQLSPA DRFEHQRKKA KLISMLDEVD RRYNHYCDQM QMVVNFFDSV 480 MGFGAATPYT ALAQKAMSRH FRCLKDAIAA QLRGTCEALG EKDAGTGSGL TKGETPRLRA 540 IDQSLRQQRA FHHMGIMEQE AWRPQRGLPE RSVNILRSWL FEHFLHPYPS DADKHLLARQ 600 TGLSRNQVSN WFINARVRLW KPMIEEMYQQ ECKELEGSSG AGDDPSGADD THSPTTTAAA 660 HHQHRHGQLM VEHGGASSGG GAAMSSHKHE PGVVAGPSSS SAAAVADAAF VGIDPVELLG 720 GDGAAADDLY GRFDPAGAVR VRYGPAGAAA GAAAAAAGDV SLTLGLQHAG AGNAGPDGSG 780 RFSLRDYSGC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-17 | 568 | 625 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-17 | 568 | 625 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.98370 | 0.0 | leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764091 | 0.0 | ||||
Expression Atlas | Q10DD6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g52239.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g52239 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287476 | 0.0 | AK287476.1 Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631398.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 1e-139 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | Q10DD6 | 0.0 | Q10DD6_ORYSJ; Homeodomain protein JUBEL1, putative, expressed | ||||
STRING | OS03T0732100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4433 | 29 | 45 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 1e-123 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g52239.1 |
Entrez Gene | 9266975 |
Publications ? help Back to Top | |||
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