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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g48450.3 | ||||||||
Common Name | LOC4333775, Os03g0690600, OsJ_12174, OSJNBa0022C08.1, OSNPB_030690600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 732aa MW: 82218.8 Da PI: 6.8803 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 387.4 | 1.6e-118 | 356 | 727 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+av+++d + a++lL++++++a p+gd qRla +f+ +L+arla+++s+ly++l +++t+ s+ l+a++l+ ++P+ ++ LOC_Os03g48450.3 356 LRTLLIHCAQAVAADDRRTANELLKQIRQHAKPNGDGSQRLAYCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRL 445 6789************************************************************999999...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 sh++ Nq+Il ++++++vHiiDf+i G+QWp+L++ L +R++gpp+lRiTg++ p++g +e++eetg+rLa++Ae++gvpfe++ +a+ LOC_Os03g48450.3 446 SHFLSNQTILSLTKNASKVHIIDFGIYFGFQWPCLIRRLFKREGGPPKLRITGIDVPQPGfrPTERIEETGQRLAEYAEKIGVPFEYQG-IAS 537 ***********************************************************9*****************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++ +e+L++k++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+le+++pr LOC_Os03g48450.3 538 KWETICVEDLNIKKDEVVIVNCLYRFRNLIDETVAIDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPR 630 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 ++ +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++ +ak ++ ++ + + ++e+s++l++gWk+r ++++ LOC_Os03g48450.3 631 DDAQRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVLKAKDKVKDIYHKDFVIDEDSEWLLQGWKGRIIYAI 723 ********************************************************************888********************** PP GRAS 371 SaWr 374 S W+ LOC_Os03g48450.3 724 STWK 727 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.704 | 330 | 707 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.6E-116 | 356 | 727 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MGLDNNFGEL SGMFCGLSYD GYTDHGSQSD YFRFADPQPA IVPQMDAGPS SAASSTASRA 60 AVSSGTDNPE DWEFISDESL NYISRMLMEE DIDEKVSMYQ EESAALRAAA KPFYDILGHK 120 FPPSPDRQLV AWPLDSPSES STSSYPHSLA SSVTSSNISG AVDSSQRRYV GHSEYRSLSG 180 HSSQPPVGPS SDVRNAMETL EDPLISNGRI PEYLFESFPT WDFRRGVDEA QKFLPGSDKV 240 VIDLEAGGVA KRQEAGKAIS LNVSKAEVLK VKKNRQSEDL DVMEGRNSKQ SAFCSDEPDW 300 IEMFDVLLRQ TEKKATDLRK MMRFEASKNS QVAQPKGPSG TRSRGRKPTK KDVVDLRTLL 360 IHCAQAVAAD DRRTANELLK QIRQHAKPNG DGSQRLAYCF ADGLEARLAG TGSQLYHKLV 420 AKRTTASDML KAYHLYLAAC PFKRLSHFLS NQTILSLTKN ASKVHIIDFG IYFGFQWPCL 480 IRRLFKREGG PPKLRITGID VPQPGFRPTE RIEETGQRLA EYAEKIGVPF EYQGIASKWE 540 TICVEDLNIK KDEVVIVNCL YRFRNLIDET VAIDSPRNRV LNTIRQVNPA IFIHGIVNGS 600 YSVPFFITRF REALFHFSAL FDMLETTVPR DDAQRALIER DLFGREALNV IACEGSDRVE 660 RPETYKQWQV RNLRAGFVQS PLNQDIVLKA KDKVKDIYHK DFVIDEDSEW LLQGWKGRII 720 YAISTWKPNN N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-51 | 360 | 727 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26916 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987057 | 0.0 | ||||
Expression Atlas | Q6AVK7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g48450.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g48450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097277 | 0.0 | AC097277.6 Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence. | |||
GenBank | AK101402 | 0.0 | AK101402.1 Oryza sativa Japonica Group cDNA clone:J033037F15, full insert sequence. | |||
GenBank | AK101848 | 0.0 | AK101848.1 Oryza sativa Japonica Group cDNA clone:J033069K04, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630936.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_015630937.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_015630938.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_015630939.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_015630940.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_015630941.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_015630942.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_015630943.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_015630944.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_025880243.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_025880244.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_025880245.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | Q6AVK7 | 0.0 | Q6AVK7_ORYSJ; GRAS family transcription factor containing protein, expressed | ||||
STRING | OS03T0690600-03 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g48450.3 |
Entrez Gene | 4333775 |