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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g47740.2 | ||||||||
Common Name | LOC4333726, Os03g0680800, Os03g47740, OSNPB_030680800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 643aa MW: 71055.9 Da PI: 6.1855 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.4 | 5.7e-09 | 401 | 438 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + LOC_Os03g47740.2 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438 664559******************************88 PP | |||||||
2 | BELL | 120.2 | 9.1e-39 | 264 | 335 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi LOC_Os03g47740.2 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 335 689*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-56 | 188 | 333 | IPR006563 | POX domain |
Pfam | PF07526 | 2.3E-51 | 194 | 331 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.357 | 379 | 442 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-28 | 381 | 451 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-9 | 382 | 446 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.04E-12 | 382 | 443 | No hit | No description |
SuperFamily | SSF46689 | 2.99E-17 | 383 | 448 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 399 | 438 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF 60 MELPGHPTAI SQDSSSREPN MVASYMDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND 120 THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYHGDD 180 NRMKNMQSEA SQAIRNSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEAEGGS 240 KGEGVSSNPQ ESTANAAPEI SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF 300 DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY 360 IDQQLRQQRA FQQYGLLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ 420 TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEADLDSN SSSDNVPRSK DKIATSEDKE 480 DLKSSMSQTY QPSQLGESKA NIGMMSLGGA PAGFHNEGNQ DDSFMNLMLK DQRPGEAEGS 540 LLHDAVAHHS DENARFMAYH LSGLGRYGNS NVSLTLGLQH PDNRLSVQNT HQPGFAGAGE 600 EIYNSTASLG VAAASSSDYE STNQIDQRQR FEPSPLMHDF VA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-16 | 388 | 445 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 388 | 445 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7976 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980567 | 0.0 | ||||
Expression Atlas | Q9AYD9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g47740.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g47740 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069994 | 0.0 | AK069994.1 Oryza sativa Japonica Group cDNA clone:J023038C04, full insert sequence. | |||
GenBank | FJ940209 | 0.0 | FJ940209.1 Oryza sativa Japonica Group clone KCS181A11 homeodomain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631000.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_025879417.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | Q9AYD9 | 0.0 | Q9AYD9_ORYSJ; Associated with HOX family protein, expressed | ||||
STRING | OGLUM03G29930.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-113 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g47740.2 |
Entrez Gene | 4333726 |