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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g47730.1 | ||||||||
Common Name | Os03g0680700, Os03g47730, OSNPB_030680700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 347aa MW: 36567.7 Da PI: 6.3931 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.1 | 3e-08 | 284 | 316 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +e+ LA +gL+ +q+++WF N R + LOC_Os03g47730.1 284 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 316 89*****************************88 PP | |||||||
2 | BELL | 58.2 | 2.1e-19 | 142 | 204 | 10 | 72 |
BELL 10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 akLlsll e++ r+++y +l+ v +sFe + g g+ + Yt+l +a+S hF +L+ ai ++ LOC_Os03g47730.1 142 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSHHFGSLRRAILRKL 204 8**********************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.2E-16 | 81 | 202 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-20 | 87 | 200 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.175 | 257 | 320 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.45E-11 | 260 | 321 | No hit | No description |
SMART | SM00389 | 5.4E-9 | 260 | 324 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 265 | 326 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-17 | 266 | 328 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.9E-17 | 277 | 316 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MVASKQLHSQ RCGGHYCQLH HHRPEEIAGA GAESHRRDGS SGCGGAGPMV VLTLGSGAAA 60 AEDDGGGRSR CCCGAGGAAP ATMVSALRGS RYLLPAQELL REAVSAAAAS ARGGDDDDEA 120 VASFPHDGKS TGIGGGGGGV QAKLLSLLSE LESRHEHYFG ELRRVSASFE PALGAGATAG 180 YTALMAQAMS HHFGSLRRAI LRKLRLHAAA AARTRSALLR LARDAMEEDD EGDGEEEEEV 240 VNRVVRRTKQ AAAARAEQAW RPLRGLPEDA VGVLRAWLFD HFLHPYPNDN EKLMLAVATG 300 LSRTQISNWF INARVRLWKP MVEEMYNDEF DDDDAGSGGG GASSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 266 | 324 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 266 | 324 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 1e-16 | 266 | 324 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-16 | 266 | 324 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 1e-16 | 266 | 324 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-16 | 266 | 324 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49163 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32974683 | 0.0 | ||||
Expression Atlas | Q9AYD8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g47730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g47730 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064665 | 0.0 | AK064665.1 Oryza sativa Japonica Group cDNA clone:002-115-B07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879418.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
TrEMBL | Q9AYD8 | 0.0 | Q9AYD8_ORYSJ; Associated with HOX family protein | ||||
STRING | OS03T0680700-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 6e-35 | BEL1-like homeodomain 11 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g47730.1 |