PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g46350.1
Common NameOSJNBa0056E06.15
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 346aa    MW: 36835.9 Da    PI: 6.5258
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g46350.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.61.4e-1741108268
          trihelix   2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                       Wt  e+++L+ea++++ +  r ++ +  ++W++v +++++rg++rs++qC+++w+nl ++ykk++++e
  LOC_Os03g46350.1  41 WTLPETMLLVEAKKRVSDGRRpAADQGLARWRWVEDYCWRRGCRRSQNQCNDRWDNLMRDYKKVRAHE 108
                       *************99988888357899*************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0843398IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-534100IPR009057Homeodomain-like
SuperFamilySSF466892.96E-636100IPR009057Homeodomain-like
PfamPF138376.3E-1439108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDADVLLGQE EDEETMNAAM AASTAGSAMA AAAREYRRGN WTLPETMLLV EAKKRVSDGR  60
RPAADQGLAR WRWVEDYCWR RGCRRSQNQC NDRWDNLMRD YKKVRAHELA AAGGGGGGGP  120
AESYWVMGRT ERKEKGLPAN LLREIYDAMG EVVERRPMSS GGGGGGAVFL AGASSSGSGG  180
LADVPAMAMQ ASPLAQLLPR PLEATANCSS GSPERKRRRP SLDNEPPGGS TPPATTGRQG  240
HQEHDDDDDE YAHHGADESS DDDGGLGGAI GRCAAILSVA LENREASEER RHREVVAAEE  300
RRGRARQARR EAGEQCMAGL ATAVSQLAGS MLALAAKRRG PAAPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218RKRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75H97
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g46350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g46350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1357920.0AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879661.10.0trihelix transcription factor ASR3
TrEMBLA0A0E0NZ820.0A0A0E0NZ82_ORYRU; Uncharacterized protein
TrEMBLQ75H970.0Q75H97_ORYSJ; Uncharacterized protein
STRINGORUFI03G29810.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.18e-42Trihelix family protein