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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g42410.1 | ||||||||
Common Name | Os03g0621600, OSJNBb0111B07.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 307aa MW: 34809.9 Da PI: 10.2556 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.1 | 1.4e-22 | 34 | 120 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l+p ++++s+ ++p++f+ ++ggk +k ++le++sg +++v++ +k+sgr+vl++GW ++v+a++Lk gDf+vFk++g+s+ + +f LOC_Os03g42410.1 34 LMPIMYMASH-KTIPNEFLHNFGGK--IPKSIKLETRSGLTFDVQV--TKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQL--KTLIF 119 6778888888.8*******888888..6778***************..********************************998777..77776 PP - CS B3 98 r 98 + LOC_Os03g42410.1 120 D 120 6 PP | |||||||
2 | B3 | 43.6 | 5.4e-14 | 224 | 305 | 15 | 99 |
-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 + ++kk+a+ + e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L gD+++F l ++ ++ + v+++r+ LOC_Os03g42410.1 224 TVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 305 566778888666431....2225555.55*********996655554555.********************99887888888888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0016 | 29 | 122 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 29 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-20 | 34 | 120 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.92E-20 | 40 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-16 | 45 | 120 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-20 | 46 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-22 | 201 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-20 | 202 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.47E-16 | 207 | 304 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 210 | 306 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.001 | 211 | 306 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-12 | 225 | 305 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVKILKTTLR ATTMLKVLVK IRLSLFLTFS VLCLMPIMYM ASHKTIPNEF LHNFGGKIPK 60 SIKLETRSGL TFDVQVTKNS GRVVLQSGWA SYVSAHDLKI GDFLVFKYSG DSQLKTLIFD 120 SSGCEKVCEK PVDMSGRSYD IAMRNSQDEK KKRKQRDISR QGTVKPSEEG LKAELVPGCI 180 LPSRTDLTRL QKNILIEKVK AINSETPIYG YVMNNSSIHG IPCTVEISKK YADVYLPFED 240 GTVVLQHHGK SWNVRCCLTK QNSKRFLKGW RQFAGDNKLH LGDICLFDLL KDKKKYVMDV 300 HIIRRK* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q851V1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g42410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g42410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC097280 | 0.0 | AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629587.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
Swissprot | Q851V1 | 0.0 | Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | I1PDK3 | 0.0 | I1PDK3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0244900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 | Representative plant | OGRP5872 | 4 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g42410.1 |