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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g42290.1 | ||||||||
Common Name | OsJ_11758 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 350aa MW: 40458.2 Da PI: 10.2521 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.1 | 4.2e-15 | 36 | 134 | 3 | 99 |
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 +++++s+v+++ + lv+ k++a ++ +++s+t+tl+ ++r+W k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+ + ++f+ LOC_Os03g42290.1 36 TTMKHSNVNSHhASLVIAKHYACAYF--PHTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDICIFHLKnFNgRKFR 126 678888888886789*******8996..456779999985788*******77888888*************************9866668888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v+++r+ LOC_Os03g42290.1 127 ATVHLLRE 134 89988875 PP | |||||||
2 | B3 | 56.2 | 6.2e-18 | 251 | 344 | 7 | 98 |
.-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS B3 7 psdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93 +s+v++ +++l ++fa ++ ++ e +tltl + +g+ W+vk+ r +sg ++t GW++Fv++n+L++ D+++F+l+++ ++ ++ LOC_Os03g42290.1 251 KSNVGTDglYIITLGRQFAIRYL-PEGE-QTLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLTKNseRGLAMK 339 455555522345899****9993.3334.45555554999*******..777776689***********************997733455566 PP EEEE- CS B3 94 vkvfr 98 v+++r LOC_Os03g42290.1 340 VHIIR 344 66666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-18 | 26 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-20 | 29 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.91E-20 | 32 | 123 | No hit | No description |
SMART | SM01019 | 0.0015 | 34 | 135 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.166 | 35 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-14 | 35 | 134 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-22 | 237 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-20 | 238 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-15 | 243 | 344 | No hit | No description |
PROSITE profile | PS50863 | 12.816 | 245 | 346 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-10 | 245 | 346 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-16 | 249 | 345 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MPGYVLSRGT NLSQAHEEKL DMLVQEIRPE IPLYVTTMKH SNVNSHHASL VIAKHYACAY 60 FPHTSQTITL KWHGKNRKWH PKFYIRKDQV GYILHGRWID FVRHNHVKEG DICIFHLKNF 120 NGRKFRATVH LLRETIPHSF GALHIPKRFE SRNGRMRLKM TDDRRVSSTE CRRGTMEPST 180 TNVKKEADNE QCNNGQGKRQ EPLNFDVSVG SSKPYLTADR VSLTEEQFMK VEENVHSIQS 240 EGPIYVSIMN KSNVGTDGLY IITLGRQFAI RYLPEGEQTL TLLTTGTGKA WQVKMRPRSG 300 DARMFTLGWR DFVRDNRLQT EDICLFQLTK NSERGLAMKV HIIRHNERS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53859 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985660 | 0.0 | ||||
Expression Atlas | B9F9R1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g42290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g42290 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100451 | 0.0 | AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630232.2 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like | ||||
Swissprot | Q851W4 | 0.0 | Y3205_ORYSJ; B3 domain-containing protein Os03g0620500 | ||||
TrEMBL | B9F9R1 | 0.0 | B9F9R1_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI03G27200.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ORGLA03G0244100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g42290.1 |
Publications ? help Back to Top | |||
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