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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g42280.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 315aa MW: 36480.2 Da PI: 9.8132 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.6 | 9.9e-18 | 60 | 142 | 17 | 98 |
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 v+pk++a++h + es+t+tl+ ++++W + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+ + ef +v+++r LOC_Os03g42280.2 60 VIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEFGATVHLLR 142 8*********6..446779999985666****99977999999*************************87444566667777666 PP | |||||||
2 | B3 | 60.4 | 3e-19 | 218 | 310 | 8 | 99 |
-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 s+v++ ++++ ++fa+++ +++ e++ l++ +++ W+vk+ r +sg ++t+GW++Fv++n+L+ D+++F+l+++ s+ +++v++ LOC_Os03g42280.2 218 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFQLMNDeSKLTMTVHI 307 555555112346689***999.3444455566777899*******..77777779**************************998********* PP E-S CS B3 97 frk 99 +r+ LOC_Os03g42280.2 308 IRR 310 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.055 | 44 | 144 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0012 | 45 | 145 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-16 | 59 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-17 | 60 | 143 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.24E-17 | 60 | 142 | No hit | No description |
SuperFamily | SSF101936 | 5.49E-18 | 60 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-22 | 203 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.75E-19 | 204 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.05E-15 | 209 | 309 | No hit | No description |
PROSITE profile | PS50863 | 11.801 | 211 | 311 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-6 | 211 | 311 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-19 | 215 | 311 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MNCAWCMVSC TICSLFLSVE KAVKFALVYR PLHNAKFIFS FLYFTSQKYI YSIIFCLDQV 60 IPKRYASAHF PLESQTITLQ RQGKNKKWYP MFYIRKDGSG YMLYGCWKNF VRDNHVKEGD 120 MCIFHLTKFT GGEFGATVHL LRETKSGSLG SFHTSHKRFD LRDGRTWPKV TGVRRVSSRP 180 YLTADRVSLT EEQVRKVEEV VHSIQSEGPM YVSIMNKSNV GTDGLYIIIF GRQFATRYLP 240 EGEQTLTLLM TGKSNAWQVK MRPRSGDAQM ITTGWRHFVH DNHLQIEDIC LFQLMNDESK 300 LTMTVHIIRR NEKS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.59392 | 0.0 | callus| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987378 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g42280.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g42280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102169 | 0.0 | AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628609.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X1 | ||||
Refseq | XP_015628610.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X2 | ||||
Refseq | XP_015628611.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X2 | ||||
Swissprot | Q851W5 | 0.0 | Y3204_ORYSJ; B3 domain-containing protein Os03g0620400 | ||||
TrEMBL | A0A0D3FLC0 | 0.0 | A0A0D3FLC0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A2XJM2 | 0.0 | A2XJM2_ORYSI; Uncharacterized protein | ||||
STRING | OS03T0620400-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 2e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g42280.2 |
Publications ? help Back to Top | |||
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