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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g41800.1 | ||||||||
Common Name | OSJNBb0096H12.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 692aa MW: 79693.7 Da PI: 8.4305 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.8 | 1.1e-15 | 71 | 157 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk.leleHnHel 89 +fY++YA ++GF+++ks+++k r+ +C++egk+ ++ ++ +++r+r+++++gCka +k++ ++ +v++ +el+HnH+l LOC_Os03g41800.1 71 NFYQRYACHAGFDIKKSRTHKA-------FREVCCTREGKHVSKVTD-GDRQRRRPSKKMGCKAFMKLRHNYdggALSSVVYDvVELQHNHPL 155 6****************99887.......7899**********9999.99999******************9643234456651569*****9 PP FAR1 90 ap 91 +p LOC_Os03g41800.1 156 TP 157 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-10 | 71 | 157 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-15 | 279 | 332 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.668 | 532 | 568 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MGCPPASSPH QQCTPTRQAG DAPSQWMPPC LDDNDIATPT PNRVYNHGPS VPPHMVPTEG 60 MAFPTYDNAY NFYQRYACHA GFDIKKSRTH KAFREVCCTR EGKHVSKVTD GDRQRRRPSK 120 KMGCKAFMKL RHNYDGGALS SVVYDVVELQ HNHPLTPSPS AVKHMRAHKN RDDTVMQFVD 180 TMQESHVPQS CIMGVLSDLH GGQDNIPFTS RDVENRKVAN VRKENANDIN KLLEFFNECT 240 LQNPKFYWDA QLDENGVIKN LFWSHASSQV EFADFGDAVT FDTTYKTNIY EMPLAMFVGA 300 NHHMQSTLFG CALLRDEKVQ SFEWLFNTFN KWHILNRHSD PLNTIFARDA QIEPDMMLCI 360 NQTYTPYEFE TSWDQFIKSY DLEGCPIMKA LYDIREKWVP AFFKKEYCRR MTSTQRSESM 420 NKLVKHKFAD HQTALHRFAR RMLEVITDRK EKEAAETRAC SMSRLYTRAA FRLFEEVLQD 480 STDFRITQDD NFRNGLKYHH VVDNRVVFLL ESMPGEIKDS ARFLSLVPQK QFKVIADVDE 540 GVFTCKCKQW EHTGMFCTHM LRAFVHVQVE KIPAVYILKR YTMKAKSNVP FDRRDRETTR 600 PDGVQESYRT NMMMIEAFGV ARAACKLKVA FDRAMAVLKG LRSQVEEIPR DSTATVDTNT 660 QDGIAGRVQN AEISREPPSP PPKVKNKRKD P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 116 | DRQRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6AU28 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g41800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g41800 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135227 | 0.0 | AC135227.4 Oryza sativa chromosome 3 BAC OSJNBb0096H12 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612933.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_015612934.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | Q6AU28 | 0.0 | Q6AU28_ORYSJ; Putative FAR1 protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-72 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g41800.1 |